CAZyme3D

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Entry ID

Information for CAZyme ID: QNH67987.1

Basic Information

GenBank IDQNH67987.1
FamilyGT1
Sequence Length439
UniProt IDA0A7H9SLM6(100,100)Download
Average pLDDT?87.18
CAZy50 ID82162
CAZy50 RepNo, QNH68001.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1199090
KingdomEukaryota
PhylumRotifera
ClassEurotatoria
OrderPloima
FamilyBrachionidae
GenusBrachionus
SpeciesBrachionus koreanus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MERKKAFVIP  FPQHGHINPM  LSLARELVHN  YNYDVNFYGL  EDRREAIQST  GATYQEFKYF60
DMKNFPSMPD  IIDVFGYQLK  VTHHELPSLF  EDCIREQPDV  IIYDFMSLHG  KFLVNLVRKK120
KCLKRPIGVC  FTPTFATKPG  IFPTHEEWSE  ITGNSFWMAL  RIIWLFFLQM  LLSLKFRLNI180
WNTMKFFSET  DDLNLIGISP  EFQPKREHFG  DEFEFIGHSA  SNELRKAKKI  DNEKLKHFLD240
ATNVVNPNFD  PSKKNEKILI  YASLGTVFND  NKIVFDKILE  AYDLFKSKNS  FFQTRLVMSV300
GQKVFDQYKN  FKCPNDIIIL  PYVPQINVLE  KASLYVTHCG  MSSANEAVYY  AVPVICIPMA360
ADQPFVAKRL  CDDLNLGLRL  QPFDFTPSQL  CEGIAKVLND  QSFHKRIYEF  SKLMTKYNGG420
KVAAEKINKT  VEKINKKLN439

Predicted 3D structure by AlphaFold2 with pLDDT = 87.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT1(251-427)

MERKKAFVIP  FPQHGHINPM  LSLARELVHN  YNYDVNFYGL  EDRREAIQST  GATYQEFKYF60
DMKNFPSMPD  IIDVFGYQLK  VTHHELPSLF  EDCIREQPDV  IIYDFMSLHG  KFLVNLVRKK120
KCLKRPIGVC  FTPTFATKPG  IFPTHEEWSE  ITGNSFWMAL  RIIWLFFLQM  LLSLKFRLNI180
WNTMKFFSET  DDLNLIGISP  EFQPKREHFG  DEFEFIGHSA  SNELRKAKKI  DNEKLKHFLD240
ATNVVNPNFD  PSKKNEKILI  YASLGTVFND  NKIVFDKILE  AYDLFKSKNS  FFQTRLVMSV300
GQKVFDQYKN  FKCPNDIIIL  PYVPQINVLE  KASLYVTHCG  MSSANEAVYY  AVPVICIPMA360
ADQPFVAKRL  CDDLNLGLRL  QPFDFTPSQL  CEGIAKVLND  QSFHKRIYEF  SKLMTKYNGG420
KVAAEKINKT  VEKINKKLN439

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help