CAZyme3D

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Entry ID

Information for CAZyme ID: QNE41774.1

Basic Information

GenBank IDQNE41774.1
FamilyPL10_1
Sequence Length313
UniProt IDA0A7G6YTF9(100,100)Download
Average pLDDT?97.43
CAZy50 ID35839
CAZy50 RepNo, UPL50301.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2596915
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. NBH84

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLYQRSVGG  WPKAVGDVKV  KYDHPLTAAQ  KASILDDKGR  NDPTIDNNAT  TREIRYLVEA60
AKRTGNLAYR  RAAEDGIRYL  LKMQYANGGF  PQYYPDHSNY  RHQITYNDNA  MIQAMQVLRD120
LAEQRGDYTL  LDQGLVEPAR  KAVARGIDCI  LKTQYVQHGQ  LTAWAAQYDE  KTLQPAKARA180
FELASLSGDE  TVAIVKFLMD  IKNPSPEIKK  SIKAAVAWLN  KVKLEGYAIR  DVTDPKQPSG240
RDRLIVPEAG  STIWARFYDL  DTNRPIYVGR  DSQVHYSLAE  IENERRVGYG  YAGTWPAKLL300
NREYPKWEKQ  WAN313

Predicted 3D structure by AlphaFold2 with pLDDT = 97.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_1(5-299)

MLLYQRSVGG  WPKAVGDVKV  KYDHPLTAAQ  KASILDDKGR  NDPTIDNNAT  TREIRYLVEA60
AKRTGNLAYR  RAAEDGIRYL  LKMQYANGGF  PQYYPDHSNY  RHQITYNDNA  MIQAMQVLRD120
LAEQRGDYTL  LDQGLVEPAR  KAVARGIDCI  LKTQYVQHGQ  LTAWAAQYDE  KTLQPAKARA180
FELASLSGDE  TVAIVKFLMD  IKNPSPEIKK  SIKAAVAWLN  KVKLEGYAIR  DVTDPKQPSG240
RDRLIVPEAG  STIWARFYDL  DTNRPIYVGR  DSQVHYSLAE  IENERRVGYG  YAGTWPAKLL300
NREYPKWEKQ  WAN313

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help