CAZyme3D

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Entry ID

Information for CAZyme ID: QNE39195.1

Basic Information

GenBank IDQNE39195.1
FamilyGH125
Sequence Length472
UniProt IDA0A7G6YL30(100,100)Download
Average pLDDT?94.57
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2596915
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. NBH84

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRRNFLHGF  SLLSTSVFFN  QYSFAGTAPK  FPVVRPTADK  RRFRSKAVEA  AITEFQKKVK60
DEELGWLFNN  CFPSTLDTTV  THGTRDGRPD  TYVITGDIDA  MWLRDSSAQV  WPYLQLVGKD120
AELRQLIAGV  INRQTSYILK  DSYANAFYDD  PNKVGEWKSD  HTKMLPGVHE  RKWEIDSLCY180
PIRLGYHYWK  TTGDTKPFDA  QWQKAIKTVL  QTFREQQRKD  DRGPYSFQRE  TTNATDTQPM240
KGYGYPIKPV  GLICSAFRPS  DDATLYSFLV  PSNFFAVVSL  RQASEMMTKL  AKDAKTAKDL300
TALADEVDAA  LKQHAIVNHP  KYGKIYAYEV  DGFGSQVLMD  DANVPSLIAL  PYLGAMPVSD360
PIYQSTRKML  LSEDNPFYFK  GTAGAGIGGP  HVGQDMIWPI  GLVTQGLTST  SDAEIKQCIQ420
TLKSTHADTG  FMHESFNKDN  PAKFSRSWFA  WANTIFGEFL  WKTYKEKPQL  LA472

Predicted 3D structure by AlphaFold2 with pLDDT = 94.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(61-460)

MNRRNFLHGF  SLLSTSVFFN  QYSFAGTAPK  FPVVRPTADK  RRFRSKAVEA  AITEFQKKVK60
DEELGWLFNN  CFPSTLDTTV  THGTRDGRPD  TYVITGDIDA  MWLRDSSAQV  WPYLQLVGKD120
AELRQLIAGV  INRQTSYILK  DSYANAFYDD  PNKVGEWKSD  HTKMLPGVHE  RKWEIDSLCY180
PIRLGYHYWK  TTGDTKPFDA  QWQKAIKTVL  QTFREQQRKD  DRGPYSFQRE  TTNATDTQPM240
KGYGYPIKPV  GLICSAFRPS  DDATLYSFLV  PSNFFAVVSL  RQASEMMTKL  AKDAKTAKDL300
TALADEVDAA  LKQHAIVNHP  KYGKIYAYEV  DGFGSQVLMD  DANVPSLIAL  PYLGAMPVSD360
PIYQSTRKML  LSEDNPFYFK  GTAGAGIGGP  HVGQDMIWPI  GLVTQGLTST  SDAEIKQCIQ420
TLKSTHADTG  FMHESFNKDN  PAKFSRSWFA  WANTIFGEFL  WKTYKEKPQL  LA472

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help