CAZyme3D

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Entry ID

Information for CAZyme ID: QND96837.1

Basic Information

GenBank IDQND96837.1
FamilyGT51
Sequence Length747
UniProt IDA0A3R9B0Q8(100,100)Download
Average pLDDT?84.21
CAZy50 ID11681
CAZy50 RepNo, AIO53918.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID95486
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia cenocepacia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIDLALPRPA  RFAGRVFAAV  VLAAPLVAHA  LPGYDDVRRN  WRSSDWVLLA  RDGTPLQRTR60
VDLAERRGAW  VSLADVSPAF  REAIVVSEDK  RFYEHSGVDW  RGIAGAAWGN  LWNERTRGAS120
TVTMQLAGLL  GDSPRRSGQR  SLPQKATQAV  NALWLERSWR  KDQILEAYLN  LVPFRGETIG180
LGALSQVLFG  KAPSGLDARE  AAIAAALVRA  PNAAPAKIAE  RACRILRDMQ  AGQACASLDG240
YVQLVVARPA  NTVRDDGAAL  APHFARRIAA  EVKPAAGAQV  RTTLDAPLQR  FARDTLMRAL300
TELNAPAHRR  NVQDGAVVVI  DNATGEIRAW  VGSSGALSSA  RDVDAVLAPR  QAGSTLKPFL360
YAQALDEKRL  TAASLLDDAP  INLAAGGGLY  IPQNYDKDFK  GWVSVRSALG  GSLNVPAVRT420
LVLVTPHRFA  RTLTALGLPL  AQEGDYYGFS  LALGSADVTL  LSLTNAYRAL  ANGGVARKVV480
DLPAAAPAPA  SGAAAPARPD  AGTRVFSEAA  SFVVTDILSD  NNARVRTFGF  DNPLATRFFS540
AVKTGTSKDM  RDNWTVGFTS  RYTVGVWVGN  ADGSPMWDVS  GVTGASPVWS  AVVGYLHRDL600
PSRAPRAPAG  VETRRIAFER  DIEPARNEWF  IAGTAVDTIR  LAAPVTPGKD  GARAPLTIGA660
PTDGTIFAID  PDIPPKNQRI  WFERSAGRAT  KFAWRLDDKV  IGHADRVAWL  PWPGRHRLEL720
VDARGNVADA  IGFEVRGAFA  KPAARKR747

Predicted 3D structure by AlphaFold2 with pLDDT = 84.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(64-229)

MIDLALPRPA  RFAGRVFAAV  VLAAPLVAHA  LPGYDDVRRN  WRSSDWVLLA  RDGTPLQRTR60
VDLAERRGAW  VSLADVSPAF  REAIVVSEDK  RFYEHSGVDW  RGIAGAAWGN  LWNERTRGAS120
TVTMQLAGLL  GDSPRRSGQR  SLPQKATQAV  NALWLERSWR  KDQILEAYLN  LVPFRGETIG180
LGALSQVLFG  KAPSGLDARE  AAIAAALVRA  PNAAPAKIAE  RACRILRDMQ  AGQACASLDG240
YVQLVVARPA  NTVRDDGAAL  APHFARRIAA  EVKPAAGAQV  RTTLDAPLQR  FARDTLMRAL300
TELNAPAHRR  NVQDGAVVVI  DNATGEIRAW  VGSSGALSSA  RDVDAVLAPR  QAGSTLKPFL360
YAQALDEKRL  TAASLLDDAP  INLAAGGGLY  IPQNYDKDFK  GWVSVRSALG  GSLNVPAVRT420
LVLVTPHRFA  RTLTALGLPL  AQEGDYYGFS  LALGSADVTL  LSLTNAYRAL  ANGGVARKVV480
DLPAAAPAPA  SGAAAPARPD  AGTRVFSEAA  SFVVTDILSD  NNARVRTFGF  DNPLATRFFS540
AVKTGTSKDM  RDNWTVGFTS  RYTVGVWVGN  ADGSPMWDVS  GVTGASPVWS  AVVGYLHRDL600
PSRAPRAPAG  VETRRIAFER  DIEPARNEWF  IAGTAVDTIR  LAAPVTPGKD  GARAPLTIGA660
PTDGTIFAID  PDIPPKNQRI  WFERSAGRAT  KFAWRLDDKV  IGHADRVAWL  PWPGRHRLEL720
VDARGNVADA  IGFEVRGAFA  KPAARKR747

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help