CAZyme3D

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Entry ID

Information for CAZyme ID: QNA46495.1

Basic Information

GenBank IDQNA46495.1
FamilyGH43_29
Sequence Length317
UniProt IDA0A7G5XLZ2(100,100)Download
Average pLDDT?94.48
CAZy50 ID20071
CAZy50 RepNo, UJF33895.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2760713
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusLacibacter
SpeciesLacibacter sediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKIVSSSIL  CLASMMSFAQ  NPIIKHIFTA  DPSPIVHKGT  LYLYTGHDTA  SVTATNYKMP60
DWHVFSTTDM  KNWKDHGTLL  SPHTFSWATG  DAYAAQCIER  DGKFYWFVST  FHKKDSVSGG120
GAAIGVAVSD  KPTGPFKDAI  GKALITNEMT  TDKKHSWDDI  DPTVMIDDDG  QAYMYWGNGS180
CKWVKLKKNM  IEIDGPINIA  PIKNFIEGPW  IYKRKEWYYL  VYASVGTKPE  MIEYCMAKSP240
TGPWEYKGII  QENVPNSFTT  HPGIIDYKGK  SYFFYHNGTL  PTGGSYRRSI  CVDYMYYNED300
GTIQKIIQTT  EGVKPIK317

Predicted 3D structure by AlphaFold2 with pLDDT = 94.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_29(21-303)

MKKIVSSSIL  CLASMMSFAQ  NPIIKHIFTA  DPSPIVHKGT  LYLYTGHDTA  SVTATNYKMP60
DWHVFSTTDM  KNWKDHGTLL  SPHTFSWATG  DAYAAQCIER  DGKFYWFVST  FHKKDSVSGG120
GAAIGVAVSD  KPTGPFKDAI  GKALITNEMT  TDKKHSWDDI  DPTVMIDDDG  QAYMYWGNGS180
CKWVKLKKNM  IEIDGPINIA  PIKNFIEGPW  IYKRKEWYYL  VYASVGTKPE  MIEYCMAKSP240
TGPWEYKGII  QENVPNSFTT  HPGIIDYKGK  SYFFYHNGTL  PTGGSYRRSI  CVDYMYYNED300
GTIQKIIQTT  EGVKPIK317

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help