CAZyme3D

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Entry ID

Information for CAZyme ID: QMV72041.1

Basic Information

GenBank IDQMV72041.1
FamilyGH102
Sequence Length404
UniProt IDA0A7G5EDG6(100,100)Download
Average pLDDT?87.29
CAZy50 ID70383
CAZy50 RepNo, AVO41369.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1562974
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusComamonas
SpeciesComamonas piscis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTNANSASNN  ISPIGARSLR  MLSMAAIVGI  LAACSTQVPL  DEPSSPTTRP  PVSGSIEVLP60
PDANEPLPPA  IQQAKSRWVP  VHWSSVPGLE  QDNLADAWNA  WIKSCGRPPA  PFAQFCSEVR120
RMSLASTEEQ  RAWMVSRFQP  YRVESLDGNP  DGMLTSYFEP  MLEGTRLPGN  GYSIPLYKSP180
ASLGTRKPWF  SRQQIETSPQ  VQAELQDKVI  AWVNDPVDAM  VLHIQGSGRV  RITEPDGSVR240
LIRVAYAATN  DHPYKSIGRW  LLDQGLVRDA  TWPGIKAWIA  ANPSRVNELL  WSNPRYVFFK300
EEPLSPLDAE  FGPNGAQGVP  LTPGRSIAVD  RASIPYGTPV  WMSSTGPTVQ  LNRLVMAQDT360
GSAILGAVRA  DYFAGWGHEA  GDFAGRVKQP  LRLWVLWPRG  VAKR404

Predicted 3D structure by AlphaFold2 with pLDDT = 87.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(183-300)

MTNANSASNN  ISPIGARSLR  MLSMAAIVGI  LAACSTQVPL  DEPSSPTTRP  PVSGSIEVLP60
PDANEPLPPA  IQQAKSRWVP  VHWSSVPGLE  QDNLADAWNA  WIKSCGRPPA  PFAQFCSEVR120
RMSLASTEEQ  RAWMVSRFQP  YRVESLDGNP  DGMLTSYFEP  MLEGTRLPGN  GYSIPLYKSP180
ASLGTRKPWF  SRQQIETSPQ  VQAELQDKVI  AWVNDPVDAM  VLHIQGSGRV  RITEPDGSVR240
LIRVAYAATN  DHPYKSIGRW  LLDQGLVRDA  TWPGIKAWIA  ANPSRVNELL  WSNPRYVFFK300
EEPLSPLDAE  FGPNGAQGVP  LTPGRSIAVD  RASIPYGTPV  WMSSTGPTVQ  LNRLVMAQDT360
GSAILGAVRA  DYFAGWGHEA  GDFAGRVKQP  LRLWVLWPRG  VAKR404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help