CAZyme3D

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Entry ID

Information for CAZyme ID: QMV17394.1

Basic Information

GenBank IDQMV17394.1
FamilyGH54
Sequence Length343
UniProt IDA0A7D7XEW9(100,100)Download
Average pLDDT?92.40
CAZy50 ID63197
CAZy50 RepNo, AZS90096.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1617967
KingdomBacteria
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyAcidobacteriaceae
GenusGranulicella
SpeciesGranulicella sp. 5B5

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLKSTSLRN  ILLLAVVAFA  FVMNPVGAAS  AQKVTPRPCD  LLASATPCVA  AISTTRALYR60
AYTGPLYQVT  RQSDKTHANI  GVLPDGYANA  AAQDAFCAHT  TCTITRLYDQ  SPNHNDLTPA120
PPGGAAHGPG  PNGYDLPAVA  NSLPATVSGH  KVYGVAILPG  MGYRNDSPKA  TAVNGEPEGV180
YMVTSALNLN  NKCCFDFGNA  ESNNLDNKAG  HMDAINIMYQ  DKLGAPDAGL  DMEDGIYGHL240
KVPVGTTFVT  DMGASDGQHS  YAIYQGNAQS  GGLTSTGIIP  LPKGYQPMKQ  EGAIILGIGG300
DNSNWAKGYF  FEGVMTKGMP  THEALEKVQS  NIVAARYAGQ  LQP343

Predicted 3D structure by AlphaFold2 with pLDDT = 92.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH54(38-338)

MPLKSTSLRN  ILLLAVVAFA  FVMNPVGAAS  AQKVTPRPCD  LLASATPCVA  AISTTRALYR60
AYTGPLYQVT  RQSDKTHANI  GVLPDGYANA  AAQDAFCAHT  TCTITRLYDQ  SPNHNDLTPA120
PPGGAAHGPG  PNGYDLPAVA  NSLPATVSGH  KVYGVAILPG  MGYRNDSPKA  TAVNGEPEGV180
YMVTSALNLN  NKCCFDFGNA  ESNNLDNKAG  HMDAINIMYQ  DKLGAPDAGL  DMEDGIYGHL240
KVPVGTTFVT  DMGASDGQHS  YAIYQGNAQS  GGLTSTGIIP  LPKGYQPMKQ  EGAIILGIGG300
DNSNWAKGYF  FEGVMTKGMP  THEALEKVQS  NIVAARYAGQ  LQP343

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help