CAZyme3D

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Entry ID

Information for CAZyme ID: QMV07898.1

Basic Information

GenBank IDQMV07898.1
FamilyCBM13, GH10, GH62
Sequence Length803
UniProt IDA0A1B1MDP8(100,100)Download
Average pLDDT?88.43
CAZy50 ID22371
CAZy50 RepNo, CCK27711.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1915
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces lincolnensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGLHRLGRR  RRTWAIGLSA  AAVVAGVVTI  LPNSAGAASL  GTEAAPSGRY  FGTAVAAGRL60
GDSAYTAIAD  REFNMITPEN  EMKWDAVQPS  RGKFDFGPAD  RIVDRARANG  QRVRGHTTVW120
HSQLPSWVSS  IGDANTLRSV  MNSHITTTMT  HFKGKVYAWD  VVNEAFADGA  GGQLRGSVFQ180
KVLGNGFIEE  AFRTARAADS  SAKLCYNDYN  IENWSDAKTQ  GVYRMVKDFK  SRGVPIDCVG240
FQSHFGTGGP  PSSFRTTLSN  FAALGVDVQI  TELDIAQASP  THYADAVKAC  LSVARCTGIT300
VWGVRDSDSW  RTGENPLLFD  NNGKPKAAYT  AVVDAFKAAA  PAATAGGTTG  GTGTGEIKGL360
ASGRCIDINN  STTANGTQAQ  LWDCNGQTNQ  RWTHTSGKQL  KIYGDKCLDA  KNKGTTNGTA420
VVIWDCNGGA  NQQWNINTDG  TITGVQSGLC  LDAVGAAKAN  GTKIQLYSCA  SVDNQKWTAP480
SGSSGSSGSS  GSSGSGGTTC  ALPSTYKWSS  TGPLAQPANG  SVALKDFTTV  TYNGKHLVYA540
TTSTGSQWGA  MTFRPFTNWS  DMATAPQTGI  SGSAVAPKLF  YFAPKKIWVL  VSNGWGTAWP600
FSYRTSSDPT  DPGGWSAPKE  LFTGSLPAGS  EGTPIDPTVI  ADDQNMYLFF  ADDNGKIYKS660
AMPLGNFPGS  FGSSYTTVMS  DTKARLFEAP  EVYKVQGRNQ  YLMIVEAMGA  NGRYFRSFTA720
SSLNGPWAEQ  AGSESSPFAG  KANSGAIWTN  DISHGDLVRT  NPDQTMTIDP  CNLQFLYQGR780
DPSSDGTDYV  KLPYRPGVLT  LKR803

Predicted 3D structure by AlphaFold2 with pLDDT = 88.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH10(47-335)+CBM13(353-479)+GH62(500-772)

MKGLHRLGRR  RRTWAIGLSA  AAVVAGVVTI  LPNSAGAASL  GTEAAPSGRY  FGTAVAAGRL60
GDSAYTAIAD  REFNMITPEN  EMKWDAVQPS  RGKFDFGPAD  RIVDRARANG  QRVRGHTTVW120
HSQLPSWVSS  IGDANTLRSV  MNSHITTTMT  HFKGKVYAWD  VVNEAFADGA  GGQLRGSVFQ180
KVLGNGFIEE  AFRTARAADS  SAKLCYNDYN  IENWSDAKTQ  GVYRMVKDFK  SRGVPIDCVG240
FQSHFGTGGP  PSSFRTTLSN  FAALGVDVQI  TELDIAQASP  THYADAVKAC  LSVARCTGIT300
VWGVRDSDSW  RTGENPLLFD  NNGKPKAAYT  AVVDAFKAAA  PAATAGGTTG  GTGTGEIKGL360
ASGRCIDINN  STTANGTQAQ  LWDCNGQTNQ  RWTHTSGKQL  KIYGDKCLDA  KNKGTTNGTA420
VVIWDCNGGA  NQQWNINTDG  TITGVQSGLC  LDAVGAAKAN  GTKIQLYSCA  SVDNQKWTAP480
SGSSGSSGSS  GSSGSGGTTC  ALPSTYKWSS  TGPLAQPANG  SVALKDFTTV  TYNGKHLVYA540
TTSTGSQWGA  MTFRPFTNWS  DMATAPQTGI  SGSAVAPKLF  YFAPKKIWVL  VSNGWGTAWP600
FSYRTSSDPT  DPGGWSAPKE  LFTGSLPAGS  EGTPIDPTVI  ADDQNMYLFF  ADDNGKIYKS660
AMPLGNFPGS  FGSSYTTVMS  DTKARLFEAP  EVYKVQGRNQ  YLMIVEAMGA  NGRYFRSFTA720
SSLNGPWAEQ  AGSESSPFAG  KANSGAIWTN  DISHGDLVRT  NPDQTMTIDP  CNLQFLYQGR780
DPSSDGTDYV  KLPYRPGVLT  LKR803

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help