CAZyme3D

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Entry ID

Information for CAZyme ID: QMV05289.1

Basic Information

GenBank IDQMV05289.1
FamilyCBM35, GH39
Sequence Length860
UniProt IDA0A1B1M412(100,100)Download
Average pLDDT?95.30
CAZy50 ID21253
CAZy50 RepNo, AZQ32937.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1915
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces lincolnensis
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A1B1M412.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTADASVPEQ  LTVDLGTGTG  PFHGGASGTL  YGLYGDGVPG  LALVEGMYVR  TVTTKAQDGV60
QHPGGDALEI  LPAFVAAGGE  DVYVYLPDFY  RGFPYEWPGS  GGEEKLAGFL  DVVRRQVEHV120
LTLGAHKSHV  VYVPFNEPEG  NMFGEGEWSY  DGTSWRTDPN  AYFAAWKATY  DLIKGLDPTA180
RIAGPNTCVL  YPEVRGFLEF  ARDHDVLPDV  ITWHELSSPA  EVRTKVAEYR  ALEGELGIGP240
LPVNLNEYAH  NYHLSVPGQM  VQWIAAIEES  KVDADLAYWN  IAGNLNDSVV  EGTKGNGQWW300
LFNAYGRMTG  HTVRVTAPHP  DTQYTLQGLA  TLDRGKRQAR  ALFGGTDGAV  DVVFEAVEAD360
LFGESVHIRL  QEIPWTGQVG  ACAQPLTVWD  GELPVEEGRV  TLPVSDLDAM  SAYQAILSPG420
GNGAAPVAPS  VVWRRTYEAE  DAAYTGGGHT  RNGPEGSPSA  VDRFATSGGH  HVGGLRTGSD480
GVLTFDVEVP  KDGTYDVRVF  ANSHNLADLV  REQGPTNVFL  RVDGADPREL  LLPLGYKWAV540
WGHTDTRVEL  TAGRHRITLA  AQDPELGVTR  GDAVIDKLDL  VLRGEDPTAL  YEAEYAALAG600
GAVVSHAHRG  ASGPGAAVLP  RGGTVTFWVH  ADDDGEASVT  VDVLGPGEGL  LTVDGEPAGR660
VERGAVPLFL  TGGVNKITVT  GTSERLVVDR  LRVGPSRALL  PSTSYAAETG  ALTGTAKVTG720
RTYATGGKAV  GGIGRGPGNA  LALTVTADRA  GRHGLTIRYS  NGEQAPATHY  NPDPVCRHAD780
ISVNGAAPDR  VLFPTTFHFN  NFWTLSVPVT  LAQGANTIRF  TADELPDFDG  RFRNQHGQRS840
AHAPVIDRVT  VTPLFQEPRA  860

Predicted 3D structure by AlphaFold2 with pLDDT = 95.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(437-578)+CBM35(705-823)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help