CAZyme3D

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Entry ID

Information for CAZyme ID: QMU21950.1

Basic Information

GenBank IDQMU21950.1
FamilyGT89
Sequence Length696
UniProt IDA0A7D7YS21(100,100)Download
Average pLDDT?87.44
CAZy50 ID37027
CAZy50 RepNo, WAC57812.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36822
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia rubripertincta

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQSIDGLQST  DGVGTDAVDD  PEVKGPRATG  VPVVDKARRR  LAAASFLIGA  VAVSTFFAVG60
AWQRRWIADD  GLIVLRTLRN  LFAGNGPVFN  AGERVEANTS  TAWTYLLWFW  AWVTDGQLEY120
VALWVALVCS  VAAIPIAMYG  SARLYGNRLG  GLTGDGWTLL  LPFGAIIYIA  LPPARDFATS180
GLENGLCIFW  AAVLWCQLVA  WARRGPQTSR  RASAATLTLA  FTAGLAPLVR  PELTVFGGLV240
LLLVFFAPLG  WKMRLGVAVV  AGALPVGYQI  FRMGYYALLV  PNPAVAKDAS  GAKWEQGFAY300
LTNLFGPYVL  LLPVVMAVVA  GVILVVGARL  RRDAGTTTAD  PATVDPGRSR  LGALSARLQS360
STAVVSVVVV  AGLILIVYWM  RQGGDFMHGR  VLLVPLFVTL  LPLMVVPLTV  PAHLGAAFGR420
RRAAQESVID  DEPVEVSPAE  RRRTRVGLAG  AVAMAGLWIT  VLVWGISTHA  NVLPNAGIDI480
GRSGIVDERR  FYVTNMGNEN  PVTAEDYLAY  PRMSAMVEKI  DKYREEGGVI  LPSFNYDEWY540
VAQLPAVMPK  GAERQVTVYF  LNLGMTSMNA  PLDVRVIDQM  GLAYPLAAHT  ERLEDGRIGH600
DKILPSEWVV  AEAGAYPRKP  VLPGYLDEDL  VRQAQVALQC  PETKDRFASF  EGEWSFSRFK660
HNLKQAFTFN  SYRIQREPEY  EIARCGLEMP  PPVNPE696

Predicted 3D structure by AlphaFold2 with pLDDT = 87.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(45-688)

MQSIDGLQST  DGVGTDAVDD  PEVKGPRATG  VPVVDKARRR  LAAASFLIGA  VAVSTFFAVG60
AWQRRWIADD  GLIVLRTLRN  LFAGNGPVFN  AGERVEANTS  TAWTYLLWFW  AWVTDGQLEY120
VALWVALVCS  VAAIPIAMYG  SARLYGNRLG  GLTGDGWTLL  LPFGAIIYIA  LPPARDFATS180
GLENGLCIFW  AAVLWCQLVA  WARRGPQTSR  RASAATLTLA  FTAGLAPLVR  PELTVFGGLV240
LLLVFFAPLG  WKMRLGVAVV  AGALPVGYQI  FRMGYYALLV  PNPAVAKDAS  GAKWEQGFAY300
LTNLFGPYVL  LLPVVMAVVA  GVILVVGARL  RRDAGTTTAD  PATVDPGRSR  LGALSARLQS360
STAVVSVVVV  AGLILIVYWM  RQGGDFMHGR  VLLVPLFVTL  LPLMVVPLTV  PAHLGAAFGR420
RRAAQESVID  DEPVEVSPAE  RRRTRVGLAG  AVAMAGLWIT  VLVWGISTHA  NVLPNAGIDI480
GRSGIVDERR  FYVTNMGNEN  PVTAEDYLAY  PRMSAMVEKI  DKYREEGGVI  LPSFNYDEWY540
VAQLPAVMPK  GAERQVTVYF  LNLGMTSMNA  PLDVRVIDQM  GLAYPLAAHT  ERLEDGRIGH600
DKILPSEWVV  AEAGAYPRKP  VLPGYLDEDL  VRQAQVALQC  PETKDRFASF  EGEWSFSRFK660
HNLKQAFTFN  SYRIQREPEY  EIARCGLEMP  PPVNPE696

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help