CAZyme3D

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Entry ID

Information for CAZyme ID: QMS89664.1

Basic Information

GenBank IDQMS89664.1
FamilyGT26
Sequence Length251
UniProt IDA0A7D7QL36(100,100)Download
Average pLDDT?87.30
CAZy50 ID147818
CAZy50 RepNo, BAC08006.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1472755
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyNostocaceae
GenusNostoc
SpeciesNostoc edaphicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSNGNQAFSV  LGIPVHVMAN  YPGWLLECLH  AGKGTHVVTL  NAEMTMQAER  NQLLAQVIKN60
AELVIPDGAG  VVLYLRWLLW  QKVQRFPGIE  LAEKLLQELG  QQQTRAKIFF  YGAAPGVATN120
AADFWQQQIP  DLNIVGTHSG  YHSPEEEAQL  RETLTQLQPQ  VIFVGLGVPR  QELWIAENRH180
LCPQAIWIGV  GGSFDIWSGT  KTRAPAWLGN  NNLEWLYRLY  QEPWRWRRML  ALPEFAVKAF240
IYRLTAKGAI  S251

Predicted 3D structure by AlphaFold2 with pLDDT = 87.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(58-229)

MSNGNQAFSV  LGIPVHVMAN  YPGWLLECLH  AGKGTHVVTL  NAEMTMQAER  NQLLAQVIKN60
AELVIPDGAG  VVLYLRWLLW  QKVQRFPGIE  LAEKLLQELG  QQQTRAKIFF  YGAAPGVATN120
AADFWQQQIP  DLNIVGTHSG  YHSPEEEAQL  RETLTQLQPQ  VIFVGLGVPR  QELWIAENRH180
LCPQAIWIGV  GGSFDIWSGT  KTRAPAWLGN  NNLEWLYRLY  QEPWRWRRML  ALPEFAVKAF240
IYRLTAKGAI  S251

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help