CAZyme3D

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Entry ID

Information for CAZyme ID: QMK84485.1

Basic Information

GenBank IDQMK84485.1
FamilyCBM91, GH43_11
Sequence Length538
UniProt IDA0A7L6Z755(100,100)Download
Average pLDDT?96.19
CAZy50 ID57026
CAZy50 RepNo, AGE22437.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2742620
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter sp. RHB20-C15

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYQIENPILT  GFNPDPSLCR  VGEDYYIATS  TFEWFPGVRI  YHSRDLKHWS  LVSTPLDSVA60
LLDMKGNPDS  GGIWAPCLSY  ADGKFWLLYT  DVKIVDSPWK  NGRNFLVTAP  SIEGPWSAPV120
PMGNGGFDPS  LFHDADGRKY  YIYRPWGPRH  HSNPHNTIVL  QEFFADTQTL  SPQRSTLFTG180
TPLGYTEGAH  IYRREGYYYL  MVAEGGTSYE  HAVVVLRAKN  IDGPYELHPD  VTMMTSWHLP240
ENPLQKSGHG  SLLETHTGEW  YLAYLTSRPL  HLPGIPRLAA  GGRGYCPLGR  ETGIARIEWR300
DDWPYVEGGK  HAALTVPGPR  MTEQASVGTG  AWRTDFDSER  LDPELQTLRI  PFDDQLGSLT360
ARPGFLRLYG  NDSLNSTFTQ  STVARRWQHF  CFRAETQLAF  SPRYFQQSAG  LTCYYNSKNW420
TYCFMDWEEG  RGRTLKIIQL  DHNVAHWHLY  DNPILVPENA  ENVWLRVDVD  NLEYRYSYSF480
DGDHWQTIPL  TFEAWKLSDD  YIGGRGFFTG  AFVGLHCEDI  SGDGCYADFA  TFSYQPKV538

Predicted 3D structure by AlphaFold2 with pLDDT = 96.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_11(4-304)+CBM91(332-536)

MYQIENPILT  GFNPDPSLCR  VGEDYYIATS  TFEWFPGVRI  YHSRDLKHWS  LVSTPLDSVA60
LLDMKGNPDS  GGIWAPCLSY  ADGKFWLLYT  DVKIVDSPWK  NGRNFLVTAP  SIEGPWSAPV120
PMGNGGFDPS  LFHDADGRKY  YIYRPWGPRH  HSNPHNTIVL  QEFFADTQTL  SPQRSTLFTG180
TPLGYTEGAH  IYRREGYYYL  MVAEGGTSYE  HAVVVLRAKN  IDGPYELHPD  VTMMTSWHLP240
ENPLQKSGHG  SLLETHTGEW  YLAYLTSRPL  HLPGIPRLAA  GGRGYCPLGR  ETGIARIEWR300
DDWPYVEGGK  HAALTVPGPR  MTEQASVGTG  AWRTDFDSER  LDPELQTLRI  PFDDQLGSLT360
ARPGFLRLYG  NDSLNSTFTQ  STVARRWQHF  CFRAETQLAF  SPRYFQQSAG  LTCYYNSKNW420
TYCFMDWEEG  RGRTLKIIQL  DHNVAHWHLY  DNPILVPENA  ENVWLRVDVD  NLEYRYSYSF480
DGDHWQTIPL  TFEAWKLSDD  YIGGRGFFTG  AFVGLHCEDI  SGDGCYADFA  TFSYQPKV538

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help