Information for CAZyme ID: QMK62848.1
Basic Information
| GenBank ID | QMK62848.1 |
| Family | CBM48, GH13_11 |
| Sequence Length | 658 |
| UniProt ID | A0A7L6Y8H0(100,100) |
| Average pLDDT? | 97.29 |
| CAZy50 ID | 29953 |
| CAZy50 Rep | No, CAP50426.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2742622 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter sp. RHB21-C01 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MSQLETGNAT PHGATYDGHG VNFTLFSAHA ERVELCVFDP QGNEQRYDLP ARTGDIWHGY | 60 |
| LPDARPGLRY GYRVHGPWAP AQGHRFNPAK LLIDPCARRV EGDFKDNPLF HAGYDAPDHR | 120 |
| DNATIAAKCV VTADNYDWEG DTPPRTPWGK SVIYEAHVKG LTYLHPQIPA AIRGTYRALG | 180 |
| HPVMIAHFKR LGITALELLP VAHFASEPRL QRLGLSNYWG YNPVALFALH PAYACSPETA | 240 |
| LDEFRDAVKA LHNAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI RDDGDYHNWT | 300 |
| GCGNTLNLSQ PNVVAYACEC LRYWVETCHV DGFRFDLASV MGRTPAFRQD APLFTAIKNC | 360 |
| PVLSRVKLIA EPWDIGEGGY QVGNFPPPFA EWNDHFRDAT RRFWLRQNLT LGEFAGRVAA | 420 |
| SSDVFKRDGR LPSASVNLVT AHDGFTLRDC VCFNQKHNEA NGEENRDGTD NNQSNNHGKE | 480 |
| GLGGTLDVVE RRRDSIHALL TTLLLSQGTP MLLAGDEQGH SQHGNNNAYC QDNALTWLDW | 540 |
| SQASDGLIDF TAALIHLRQQ IPALVDDRWW EEGDGNVRWL NRFAQPLSAN EWQNGARQMQ | 600 |
| ILLSGRFLIT INATAEVAEI VLPDGEWRAV PPFAGEDNPV ITAVWPGPAH GLCVFQRG | 658 |
Predicted 3D structure by AlphaFold2 with pLDDT = 97.29 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(11-99)+GH13_11(173-521)
| MSQLETGNAT PHGATYDGHG VNFTLFSAHA ERVELCVFDP QGNEQRYDLP ARTGDIWHGY | 60 |
| LPDARPGLRY GYRVHGPWAP AQGHRFNPAK LLIDPCARRV EGDFKDNPLF HAGYDAPDHR | 120 |
| DNATIAAKCV VTADNYDWEG DTPPRTPWGK SVIYEAHVKG LTYLHPQIPA AIRGTYRALG | 180 |
| HPVMIAHFKR LGITALELLP VAHFASEPRL QRLGLSNYWG YNPVALFALH PAYACSPETA | 240 |
| LDEFRDAVKA LHNAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI RDDGDYHNWT | 300 |
| GCGNTLNLSQ PNVVAYACEC LRYWVETCHV DGFRFDLASV MGRTPAFRQD APLFTAIKNC | 360 |
| PVLSRVKLIA EPWDIGEGGY QVGNFPPPFA EWNDHFRDAT RRFWLRQNLT LGEFAGRVAA | 420 |
| SSDVFKRDGR LPSASVNLVT AHDGFTLRDC VCFNQKHNEA NGEENRDGTD NNQSNNHGKE | 480 |
| GLGGTLDVVE RRRDSIHALL TTLLLSQGTP MLLAGDEQGH SQHGNNNAYC QDNALTWLDW | 540 |
| SQASDGLIDF TAALIHLRQQ IPALVDDRWW EEGDGNVRWL NRFAQPLSAN EWQNGARQMQ | 600 |
| ILLSGRFLIT INATAEVAEI VLPDGEWRAV PPFAGEDNPV ITAVWPGPAH GLCVFQRG | 658 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.