CAZyme3D

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Entry ID

Information for CAZyme ID: QMD53979.1

Basic Information

GenBank IDQMD53979.1
FamilyCBM34, GH13_21
Sequence Length605
UniProt IDA0A7L6U5R3(100,100)Download
Average pLDDT?91.67
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2742626
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter sp. RHB35-C21

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLNAWHLPVA  PFVKQNKDQL  TITLWLAGEN  PPQRVTLRAE  NDNEEISLGM  HKQRSQPQPG60
VTAWRAAIDL  SSGQPRRRYS  FKLLWLDRQL  WFTPQGFSRF  PPARLEQFAV  DVPDNGPQWA120
ADQIFYQIFP  DRFARSQSRE  AAQDNVYYHH  AAGHDIVRRE  WDEPLTAQAG  GSTFYGGDLD180
GISEKLPYLK  TLGVTALYLN  PVFTAPSVHK  YDTEDYRHVD  PQFGGDRALL  RLRHTTQQQG240
MRLILDGVFN  HSGDSHAWFD  RHNRGTDGAC  HNPQSPWRDW  YHFSADGVAL  DWLGYSSLPK300
LDFSSESLVN  EIYRGEDSIV  RHWLKAPWSM  DGWRLDVVHM  LGEAGGAHNN  LQHVAGITQA360
AKETQSEAYV  VGEHFGDARQ  WLQADAEDAA  MNYRGFTFPV  WGFLANTDIS  YDPQFIDAQT420
CMAWMDNYRA  GLSHQQQLRM  FNQLDSHDTA  RFKSLLGKDV  ARLPLAVVWL  FTWPGVPCIY480
YGDEVGLDGN  NDPFCRKPFP  WQPEKQDANL  LALYQRLATL  RHQSQALRHG  GCQVIYAEDN540
VVVFVRVLNR  QRVLVAINRG  HACEVVLPAS  PLLSVSQWQH  QEGKGVLAED  ILTLPAISAS600
VWMGH605

Predicted 3D structure by AlphaFold2 with pLDDT = 91.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(5-115)+GH13_21(177-491)

MLNAWHLPVA  PFVKQNKDQL  TITLWLAGEN  PPQRVTLRAE  NDNEEISLGM  HKQRSQPQPG60
VTAWRAAIDL  SSGQPRRRYS  FKLLWLDRQL  WFTPQGFSRF  PPARLEQFAV  DVPDNGPQWA120
ADQIFYQIFP  DRFARSQSRE  AAQDNVYYHH  AAGHDIVRRE  WDEPLTAQAG  GSTFYGGDLD180
GISEKLPYLK  TLGVTALYLN  PVFTAPSVHK  YDTEDYRHVD  PQFGGDRALL  RLRHTTQQQG240
MRLILDGVFN  HSGDSHAWFD  RHNRGTDGAC  HNPQSPWRDW  YHFSADGVAL  DWLGYSSLPK300
LDFSSESLVN  EIYRGEDSIV  RHWLKAPWSM  DGWRLDVVHM  LGEAGGAHNN  LQHVAGITQA360
AKETQSEAYV  VGEHFGDARQ  WLQADAEDAA  MNYRGFTFPV  WGFLANTDIS  YDPQFIDAQT420
CMAWMDNYRA  GLSHQQQLRM  FNQLDSHDTA  RFKSLLGKDV  ARLPLAVVWL  FTWPGVPCIY480
YGDEVGLDGN  NDPFCRKPFP  WQPEKQDANL  LALYQRLATL  RHQSQALRHG  GCQVIYAEDN540
VVVFVRVLNR  QRVLVAINRG  HACEVVLPAS  PLLSVSQWQH  QEGKGVLAED  ILTLPAISAS600
VWMGH605

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help