CAZyme3D

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Entry ID

Information for CAZyme ID: QLN19186.1

Basic Information

GenBank IDQLN19186.1
FamilyGT112
Sequence Length406
UniProt IDA0A7L5V4K4(100,100)Download
Average pLDDT?94.98
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID562
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTLKNTFFI  PPPDTPTQAG  PENIFYDFND  GARVLLPEGK  WHVRLLDADS  ENILFCCDVD60
KGWVTSRKKY  FVRFRIQVFR  RGEETPLLDE  TLRLKDRPVL  ISFPTGTLGD  LLGWFPYAER120
FQSLHKCRLE  CTMAQDIIDL  LAPQYPQIQF  STPDKPRTVA  PYATYRVGLY  FGGDTNNQPV180
DFRKVGFHRS  AGYILGVDPR  EAPVRLDLSA  PRVIQEPYVC  IATQSTCQAK  YWNNGTGWSE240
VIAHLKSLGY  RVLCIDRDAH  YGQGFVWNHI  PWGAEDFTGK  LPLQERVNLL  RHASFFIGLP300
SGLSWLAWAT  GIPVVLISGF  SLPNSEFYTP  WRVFNSHGCY  GCWDDTSLNF  DHHDFLWCPR360
HKNTDRQFEC  TRLITGAQVN  GVINKLHRSL  NEQGVEDTLE  KGVSNE406

Predicted 3D structure by AlphaFold2 with pLDDT = 94.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(16-384)

MSTLKNTFFI  PPPDTPTQAG  PENIFYDFND  GARVLLPEGK  WHVRLLDADS  ENILFCCDVD60
KGWVTSRKKY  FVRFRIQVFR  RGEETPLLDE  TLRLKDRPVL  ISFPTGTLGD  LLGWFPYAER120
FQSLHKCRLE  CTMAQDIIDL  LAPQYPQIQF  STPDKPRTVA  PYATYRVGLY  FGGDTNNQPV180
DFRKVGFHRS  AGYILGVDPR  EAPVRLDLSA  PRVIQEPYVC  IATQSTCQAK  YWNNGTGWSE240
VIAHLKSLGY  RVLCIDRDAH  YGQGFVWNHI  PWGAEDFTGK  LPLQERVNLL  RHASFFIGLP300
SGLSWLAWAT  GIPVVLISGF  SLPNSEFYTP  WRVFNSHGCY  GCWDDTSLNF  DHHDFLWCPR360
HKNTDRQFEC  TRLITGAQVN  GVINKLHRSL  NEQGVEDTLE  KGVSNE406

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help