CAZyme3D

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Entry ID

Information for CAZyme ID: QLN01423.1

Basic Information

GenBank IDQLN01423.1
FamilyCBM34, GH13_21
Sequence Length605
UniProt IDA0A7W3ET64(100,100)Download
Average pLDDT?93.48
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID564
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia fergusonii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMLNAWHLPV  PPFVKQSKDQ  LLITLWLTGE  EPPQRIMLRT  ENDNEETSVP  MHKQRSQPQP60
GVTAWRAAID  ISIGQPRRRY  SFKLLWHDHQ  RWFTPQGFSR  MPPARLEQFA  VDVPDIGPQW120
VADQIFYQIF  PDRFARSLPR  EAEQDHIYYH  HAAGQEIILR  DWDEPVTAQA  GGSTFYGGDL180
DGISEKLPYL  KKLGVTALYL  NPVFKAPSVH  KYDTEDYRHV  DPQFGGDGAL  LRLRNNTQQM240
GMRLVLDGVF  NHSGDSHAWF  DRHNRGTGGA  CHNPESPWRD  WYSFSDDGTA  LDWLGYASLP300
KLDYQSESLV  NEIYRGEDSI  VRHWLKAPWN  MDGWRLDVVH  MLGEAGGARN  NLQHVAGITE360
AAKETQPEAY  IVGEHFGDAR  QWLQADVEDA  AMNYRGFTFP  LWGFLANTDI  SYDPQQIDAQ420
TCMAWMDNYR  AGLSHQQQLR  MFNQLDSHDT  ARFKTLLGRD  IARLPLAVVW  LFTWPGVPCI480
YYGDEVGLDG  KNDPFCRKPF  PWQVEKQDTA  LFALYQRMIA  LRKKSQALRR  GGCQVLYAED540
NVVVFVRVLN  QQRVLVAINR  GEACEVVLPA  SPLLNVAQWQ  RKEGHGQLTD  GIMALSAISA600
TVWMN605

Predicted 3D structure by AlphaFold2 with pLDDT = 93.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(6-112)+GH13_21(178-492)

MMLNAWHLPV  PPFVKQSKDQ  LLITLWLTGE  EPPQRIMLRT  ENDNEETSVP  MHKQRSQPQP60
GVTAWRAAID  ISIGQPRRRY  SFKLLWHDHQ  RWFTPQGFSR  MPPARLEQFA  VDVPDIGPQW120
VADQIFYQIF  PDRFARSLPR  EAEQDHIYYH  HAAGQEIILR  DWDEPVTAQA  GGSTFYGGDL180
DGISEKLPYL  KKLGVTALYL  NPVFKAPSVH  KYDTEDYRHV  DPQFGGDGAL  LRLRNNTQQM240
GMRLVLDGVF  NHSGDSHAWF  DRHNRGTGGA  CHNPESPWRD  WYSFSDDGTA  LDWLGYASLP300
KLDYQSESLV  NEIYRGEDSI  VRHWLKAPWN  MDGWRLDVVH  MLGEAGGARN  NLQHVAGITE360
AAKETQPEAY  IVGEHFGDAR  QWLQADVEDA  AMNYRGFTFP  LWGFLANTDI  SYDPQQIDAQ420
TCMAWMDNYR  AGLSHQQQLR  MFNQLDSHDT  ARFKTLLGRD  IARLPLAVVW  LFTWPGVPCI480
YYGDEVGLDG  KNDPFCRKPF  PWQVEKQDTA  LFALYQRMIA  LRKKSQALRR  GGCQVLYAED540
NVVVFVRVLN  QQRVLVAINR  GEACEVVLPA  SPLLNVAQWQ  RKEGHGQLTD  GIMALSAISA600
TVWMN605

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help