CAZyme3D

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Entry ID

Information for CAZyme ID: QLK00933.1

Basic Information

GenBank IDQLK00933.1
FamilyCBM2, CBM91, GH43
Sequence Length665
UniProt IDA0A7D6CGL8(100,100)Download
Average pLDDT?91.29
CAZy50 ID34100
CAZy50 RepNo, QTI88333.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID47853
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora carbonacea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRSRLRLWL  AATTALAVSA  AGATTAVSAQ  AAVGCKVTYT  VTNQWEGGFG  ANVIVDNLGD60
PITGWRLTWS  FTAGQTISQL  WNGTVSQSGG  QVTVTNASFN  GTIPTGGNVN  FGFNGTWTSN120
NPAPTSFALN  GVTCTGTVPT  GNPTTPPPTT  PPPTTPPPTT  PPPTTPPPSG  SFTNPVLWQD180
FADIDIFRVG  DAYYYSASTM  HYSPGAPILR  SYDLVNWEFA  GHSVPRLDFG  TKYDLNGSHA240
YVDGVWASAM  NYRKSNNTFY  WLGCIDFSRT  HVYSSTAVES  GWNRISTINS  CYFDAGLLID300
DNDTMYVAYG  NTQISVAQLS  ADGKTQVRAQ  QVFSTPSSVG  TLEGARFYKR  NGNYYIWLTR360
PANGQYVLKS  TNGPFGPYEM  RQVLLNMPGP  IPGGGVPHQG  GLVQTQNGQW  YYMSFIDAYP420
GGRVPALAPI  SWTADGWPQI  QTVNGAWGAS  YPNPLPTRPV  KPMIGNDTFP  GTTLGPQYEW480
NHNPDDTKWS  VNNGLRLQTA  TVTNDLYKAR  NTLTHRIQGP  TSTATIELDY  STMRDGDRSG540
LSMLRNSSAW  IGVRRDNGAS  RVVMTNNLTM  DSNWNTTNTG  TEIASAPISG  GRIWLRVNAD600
IRPGAGRQAR  FSYSTDGTNF  VSLGNALTLD  NNWPFFMGYR  FGVFNYATQA  LGGSTTVRSF660
NITTP665

Predicted 3D structure by AlphaFold2 with pLDDT = 91.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(35-134)+GH43_36(173-438)+CBM91(466-649)

MKRSRLRLWL  AATTALAVSA  AGATTAVSAQ  AAVGCKVTYT  VTNQWEGGFG  ANVIVDNLGD60
PITGWRLTWS  FTAGQTISQL  WNGTVSQSGG  QVTVTNASFN  GTIPTGGNVN  FGFNGTWTSN120
NPAPTSFALN  GVTCTGTVPT  GNPTTPPPTT  PPPTTPPPTT  PPPTTPPPSG  SFTNPVLWQD180
FADIDIFRVG  DAYYYSASTM  HYSPGAPILR  SYDLVNWEFA  GHSVPRLDFG  TKYDLNGSHA240
YVDGVWASAM  NYRKSNNTFY  WLGCIDFSRT  HVYSSTAVES  GWNRISTINS  CYFDAGLLID300
DNDTMYVAYG  NTQISVAQLS  ADGKTQVRAQ  QVFSTPSSVG  TLEGARFYKR  NGNYYIWLTR360
PANGQYVLKS  TNGPFGPYEM  RQVLLNMPGP  IPGGGVPHQG  GLVQTQNGQW  YYMSFIDAYP420
GGRVPALAPI  SWTADGWPQI  QTVNGAWGAS  YPNPLPTRPV  KPMIGNDTFP  GTTLGPQYEW480
NHNPDDTKWS  VNNGLRLQTA  TVTNDLYKAR  NTLTHRIQGP  TSTATIELDY  STMRDGDRSG540
LSMLRNSSAW  IGVRRDNGAS  RVVMTNNLTM  DSNWNTTNTG  TEIASAPISG  GRIWLRVNAD600
IRPGAGRQAR  FSYSTDGTNF  VSLGNALTLD  NNWPFFMGYR  FGVFNYATQA  LGGSTTVRSF660
NITTP665

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help