CAZyme3D

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Entry ID

Information for CAZyme ID: QLK00641.1

Basic Information

GenBank IDQLK00641.1
FamilyCBM13, GH62
Sequence Length496
UniProt IDA0A7D6CG29(100,100)Download
Average pLDDT?90.08
CAZy50 ID22371
CAZy50 RepNo, CCK27711.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID47853
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora carbonacea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVGFARPVR  WRRRWRSGLA  AAAVMAVVGG  LLTVATPASA  ATVETTAWYV  LVNRNSGKAL60
DVNGASTADG  AQFIQWTRTN  TNNQQFQFVD  SGGGYYRLKA  RHSGKVAAVS  GSSTANGAAI120
VQATDNNGTN  QQFQLVDSDG  GYVRLINRNS  GKAFDVAGLS  TADGANVQQW  DNWNGANQQW180
QLVRVDGGTG  TCALPSTYRW  TSTGPLAQPK  AGWAALKDFS  AVVHNGQKLV  YATTHNTIAG240
EGGKWESTMF  SPFTNWSDMA  SATQHTLPFN  PVAPTLLYFA  PKNIWVLAYQ  WGWPYSFSYR300
TSTDPTNPNG  WGPHQELFTG  TLPTGAPIDQ  TLIADGTNMY  LFFADDLGNI  YRASMPLGNF360
PGSFGSSYTK  IMSDTPQRLF  EAVEVYKVQG  QNQYLMIVEA  QSSQGRYFRS  FTATSLDGTW420
TPQADTLTNP  FAGKANSGAT  WTNDISHGDV  LRTNPDQTKT  IDPCNLQFLY  QGRDPSSDGM480
DYGILPYRPG  VLTLQR496

Predicted 3D structure by AlphaFold2 with pLDDT = 90.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM13(47-186)+GH62(192-465)

MSVGFARPVR  WRRRWRSGLA  AAAVMAVVGG  LLTVATPASA  ATVETTAWYV  LVNRNSGKAL60
DVNGASTADG  AQFIQWTRTN  TNNQQFQFVD  SGGGYYRLKA  RHSGKVAAVS  GSSTANGAAI120
VQATDNNGTN  QQFQLVDSDG  GYVRLINRNS  GKAFDVAGLS  TADGANVQQW  DNWNGANQQW180
QLVRVDGGTG  TCALPSTYRW  TSTGPLAQPK  AGWAALKDFS  AVVHNGQKLV  YATTHNTIAG240
EGGKWESTMF  SPFTNWSDMA  SATQHTLPFN  PVAPTLLYFA  PKNIWVLAYQ  WGWPYSFSYR300
TSTDPTNPNG  WGPHQELFTG  TLPTGAPIDQ  TLIADGTNMY  LFFADDLGNI  YRASMPLGNF360
PGSFGSSYTK  IMSDTPQRLF  EAVEVYKVQG  QNQYLMIVEA  QSSQGRYFRS  FTATSLDGTW420
TPQADTLTNP  FAGKANSGAT  WTNDISHGDV  LRTNPDQTKT  IDPCNLQFLY  QGRDPSSDGM480
DYGILPYRPG  VLTLQR496

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help