CAZyme3D

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Entry ID

Information for CAZyme ID: QLC58247.1

Basic Information

GenBank IDQLC58247.1
FamilyGH171
Sequence Length397
UniProt IDA0A0B7GXY2(100,100)Download
Average pLDDT?92.57
CAZy50 ID87964
CAZy50 RepNo, UTC47863.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID162
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema phagedenis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLLCIFSL  LCCTIFLFAE  KIILGIERVY  EHRHLFEGKR  VGLITNQTGI  NAKGVSSIDI60
LAEAVNLTAL  FSPEHGIRGD  AREGAAIEDT  IDAKTGLTVY  SLYGKTKRPT  EQMVQDIDIL120
CFDIQDVGAR  FYTYIYTMAY  AMEACAKFNK  TFVVFDRPNP  ISGSAVEGTI  LDMEYRSFVG180
YYPIVQRHGM  TVGELARLFN  TEYKIQCTLH  VIAMKNWDRN  SYFNSLPLPW  IPTSPNIPSA240
ETALLYAGIC  VFEGTNISVG  RGTTMPFQYI  GAPFIDAPEL  ADSLNRLNLS  GLLFVPAYFT300
PSLSLHKNIP  CKGVQIIVTD  KAQCKPVYAG  FVILYTIREL  YQTDFKIINA  PNKYCGLNLL360
TGTNKITENK  LSLTELDALM  QKDTKRFMRI  RRRYLLY397

Predicted 3D structure by AlphaFold2 with pLDDT = 92.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(41-397)

MKKLLCIFSL  LCCTIFLFAE  KIILGIERVY  EHRHLFEGKR  VGLITNQTGI  NAKGVSSIDI60
LAEAVNLTAL  FSPEHGIRGD  AREGAAIEDT  IDAKTGLTVY  SLYGKTKRPT  EQMVQDIDIL120
CFDIQDVGAR  FYTYIYTMAY  AMEACAKFNK  TFVVFDRPNP  ISGSAVEGTI  LDMEYRSFVG180
YYPIVQRHGM  TVGELARLFN  TEYKIQCTLH  VIAMKNWDRN  SYFNSLPLPW  IPTSPNIPSA240
ETALLYAGIC  VFEGTNISVG  RGTTMPFQYI  GAPFIDAPEL  ADSLNRLNLS  GLLFVPAYFT300
PSLSLHKNIP  CKGVQIIVTD  KAQCKPVYAG  FVILYTIREL  YQTDFKIINA  PNKYCGLNLL360
TGTNKITENK  LSLTELDALM  QKDTKRFMRI  RRRYLLY397

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help