CAZyme3D

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Entry ID

Information for CAZyme ID: QKW40578.1

Basic Information

GenBank IDQKW40578.1
FamilyGT2
Sequence Length236
UniProt IDA0A7H8MEA4(100,100)Download
Average pLDDT?86.61
CAZy50 ID37172
CAZy50 RepNo, QKW23993.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2742128
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyThermomonosporaceae
GenusActinomadura
SpeciesActinomadura sp. NAK00032

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDVVLPCLNE  AEALPWVLDR  MPPGFRPLVV  DNASTDGSAR  VAAARGARVV  DAPERGFGAA60
CHAGLLAAGS  EVVCVMDADA  SLDPAELPRL  TAALAALRAA  APAGPGGAGG  AGGPAPGAGL120
VLGRRRPAGR  GAWPPHARLG  NAVLARSLNR  RAGTRLRDLG  PMRAAPRAAL  LGLGLADRRF180
GYPLEMVLRA  AAEGWAVAEV  DVAYRPRTGA  SKVTGTLGGT  VRAVRDMRRV  LAEAAR236

Predicted 3D structure by AlphaFold2 with pLDDT = 86.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(2-100)

MDVVLPCLNE  AEALPWVLDR  MPPGFRPLVV  DNASTDGSAR  VAAARGARVV  DAPERGFGAA60
CHAGLLAAGS  EVVCVMDADA  SLDPAELPRL  TAALAALRAA  APAGPGGAGG  AGGPAPGAGL120
VLGRRRPAGR  GAWPPHARLG  NAVLARSLNR  RAGTRLRDLG  PMRAAPRAAL  LGLGLADRRF180
GYPLEMVLRA  AAEGWAVAEV  DVAYRPRTGA  SKVTGTLGGT  VRAVRDMRRV  LAEAAR236

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help