CAZyme3D

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Entry ID

Information for CAZyme ID: QKW14173.1

Basic Information

GenBank IDQKW14173.1
FamilyCBM13, GH18
Sequence Length459
UniProt IDA0A7H8KCL3(100,100)Download
Average pLDDT?89.81
CAZy50 ID74033
CAZy50 RepNo, UWP80037.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2742132
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesVerrucosispora sp. NA02020

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSPRPRPRS  ALAAGLLALV  TAGATLAVTP  TAAHAVVLPN  NFKSVGYMPS  WTGNVNSVQY60
GKLTHINYAF  VLPNSNGTLR  PVENPSKLSS  LVSLARANNV  KVSIAVGGWN  DGDDSAFEAL120
AANAGTRTTF  VNSLVSFVNQ  YGLDGVDMDW  EYPDPGASAA  NYALLMQQLG  NALRPQGKLL180
TAAVVAEGYY  RDGVPTSVFN  HVDFLNIMAY  DGGSPHANYD  WSINAVNGWK  ARGLPAAKAV240
LGVPFYSRPG  YYTYTQLVGM  DPANANRDCT  TVGGVQQCYN  GIPTVKRKTQ  WAMANAGGMM300
NWELTQDTSG  STSLVSAIYD  TVMGGGTPPP  TGRTGPITGI  AGKCVDVAAA  SNANGTAVQL360
YTCNGTSAQS  WTVASGGTLR  ALGKCLDVAS  AGTVNGTPVQ  LWDCNGTTAQ  VWQAQSNGTL420
RNPASNRCLD  ATGNSSADGT  RLQIWDCFGG  ANQVWRLPA459

Predicted 3D structure by AlphaFold2 with pLDDT = 89.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(43-314)+CBM13(340-456)

MSSPRPRPRS  ALAAGLLALV  TAGATLAVTP  TAAHAVVLPN  NFKSVGYMPS  WTGNVNSVQY60
GKLTHINYAF  VLPNSNGTLR  PVENPSKLSS  LVSLARANNV  KVSIAVGGWN  DGDDSAFEAL120
AANAGTRTTF  VNSLVSFVNQ  YGLDGVDMDW  EYPDPGASAA  NYALLMQQLG  NALRPQGKLL180
TAAVVAEGYY  RDGVPTSVFN  HVDFLNIMAY  DGGSPHANYD  WSINAVNGWK  ARGLPAAKAV240
LGVPFYSRPG  YYTYTQLVGM  DPANANRDCT  TVGGVQQCYN  GIPTVKRKTQ  WAMANAGGMM300
NWELTQDTSG  STSLVSAIYD  TVMGGGTPPP  TGRTGPITGI  AGKCVDVAAA  SNANGTAVQL360
YTCNGTSAQS  WTVASGGTLR  ALGKCLDVAS  AGTVNGTPVQ  LWDCNGTTAQ  VWQAQSNGTL420
RNPASNRCLD  ATGNSSADGT  RLQIWDCFGG  ANQVWRLPA459

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help