CAZyme3D

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Entry ID

Information for CAZyme ID: QKS64010.1

Basic Information

GenBank IDQKS64010.1
FamilyGH8
Sequence Length412
UniProt IDA0A6N1BGM6(100,100)Download
Average pLDDT?89.83
CAZy50 ID1370
CAZy50 RepNo, AIS89543.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID82541
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusCupriavidus
SpeciesCupriavidus gilardii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARFAMARFA  MPRFAMAACL  RGNLRRLAAA  SRALLGAALL  TASLGCAAAS  CPWPAWDSFK60
RDTVSADGRV  IDASTPQQTT  VSEGQAYALF  FALVANDRPT  FERLLAWTEN  NLAEGDLASR120
LPAWIWGKRE  AAEGKPERWG  VLDGNPASDA  DLWIAYALLE  AGRLWQERRY  TALGTVIARQ180
VVRQETALLP  GLGRTLLPGP  MGFHPSPTMW  RLNPSYVPPQ  LMRRFAALWP  QQPEWIQLLS240
SSARLLLDTA  PRGFSPDWVE  YHGGAKPGFR  PDQQTQAEGA  YNAIRVYLWA  GMLSPQDPLR300
APLLKTYRPM  ADYTIAQGHP  PERVDTRSGT  VGPNSGNAGF  SAAVAPYLAA  LGETGAAQRQ360
VERMRKLAAE  QPLGYYSQVL  ALFALGHLDG  LYRFEADGAL  TPAWTATCPA  RR412

Predicted 3D structure by AlphaFold2 with pLDDT = 89.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(53-387)

MARFAMARFA  MPRFAMAACL  RGNLRRLAAA  SRALLGAALL  TASLGCAAAS  CPWPAWDSFK60
RDTVSADGRV  IDASTPQQTT  VSEGQAYALF  FALVANDRPT  FERLLAWTEN  NLAEGDLASR120
LPAWIWGKRE  AAEGKPERWG  VLDGNPASDA  DLWIAYALLE  AGRLWQERRY  TALGTVIARQ180
VVRQETALLP  GLGRTLLPGP  MGFHPSPTMW  RLNPSYVPPQ  LMRRFAALWP  QQPEWIQLLS240
SSARLLLDTA  PRGFSPDWVE  YHGGAKPGFR  PDQQTQAEGA  YNAIRVYLWA  GMLSPQDPLR300
APLLKTYRPM  ADYTIAQGHP  PERVDTRSGT  VGPNSGNAGF  SAAVAPYLAA  LGETGAAQRQ360
VERMRKLAAE  QPLGYYSQVL  ALFALGHLDG  LYRFEADGAL  TPAWTATCPA  RR412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help