CAZyme3D

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Entry ID

Information for CAZyme ID: QKH86988.1

Basic Information

GenBank IDQKH86988.1
FamilyGH2
Sequence Length1020
UniProt IDA0A7D4FRD2(100,100)Download
Average pLDDT?96.04
CAZy50 ID12849
CAZy50 RepNo, UBD77039.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID817
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKPIKLTFL  LILACLVMVP  AKAQKTPEWQ  SQYAVGLNKL  APHTYVWPYA  DAADVKKGDY60
EQSPYYLSLN  GKWKFHWVKN  PDLRPKDFYK  PSFYTGGWAD  INVPGNWERQ  GYGTAIYVNE120
TYEFDDKMFN  FKKNPPLVPF  EENEVGSYRR  TFTVPAGWKD  RRVVLCCEGV  TSFYYVWVNG180
HFLGYNQGSK  TAAEWDITDK  LEEGENTVAL  EVYRWSSGSY  LECQDMWRLS  GIERDVYLYS240
TPKQYIADYK  VNATLEKERY  KDGIFGLDVA  VEGPANGAVS  ITYTLNDAAG  RPVLSGEMPV300
KSRGLSNFIT  FGEQRLKDVK  PWSAEHPNLY  TLVLELKNAG  GRVTEVTGCE  VGFRTSEIKD360
GRFCINGVPV  LVKGTNRHEH  SQLGRTVSKE  LMEQDIRLMK  LHNINTVRNS  HYPTHPYWYQ420
LCDRYGLYMI  DEANIESHGM  GYGPASLAKD  STWLTAHMDR  THRMYERSKN  HPAIVIWSLG480
NEAGNGINFE  RTYDWLKSVE  KNRPVQYERA  EQNYNTDIYC  RMYRSVDEIK  TYLAQKDIYR540
PFILCEYVHA  MGNSVGGLKE  YWDVFENNPM  AQGGCVWDWV  DQSFREIDAN  GRWYWSYGGD600
YGPKGVPSFG  NFCCNGLVSA  DRVPHPHLLE  VKKIYQNIKC  TLLNKSNLTI  RVKNWFDFSN660
LNEYILHWQV  VGDNGQTVTE  GTKEVNCAPH  ATVDMTLGKV  VLPANVREGY  LNLSWTRKEA720
SPMVGTDWEV  AYDQFVLPGT  KNSTAYLPAK  AGQTAFTLDK  ATGALNSFTL  DGQELLATPV780
TLSLFRPATD  NDNRDRNGAY  LWRKSGFDQL  SQKVVSLKES  KSTATARVEV  LNAKGTKVGD840
ADFIYSLNAA  GALKVKVTFR  PDTAVVKSMA  RLGLAFEMND  TFGNVAYLGR  GDNETYADRM900
QSGKIGLYRT  TAERMFHYYV  TPQSTGNRTD  VRWMKLEDEA  GQGIFVDSNR  PFQFSVVPFT960
DDVLEKARHI  NDLERNGRIT  VHLDAEQAGV  GTATCGPGVQ  PQYRVPLTEQ  SFEFTLRGVK1020
1020

Predicted 3D structure by AlphaFold2 with pLDDT = 96.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(58-903)

MNKPIKLTFL  LILACLVMVP  AKAQKTPEWQ  SQYAVGLNKL  APHTYVWPYA  DAADVKKGDY60
EQSPYYLSLN  GKWKFHWVKN  PDLRPKDFYK  PSFYTGGWAD  INVPGNWERQ  GYGTAIYVNE120
TYEFDDKMFN  FKKNPPLVPF  EENEVGSYRR  TFTVPAGWKD  RRVVLCCEGV  TSFYYVWVNG180
HFLGYNQGSK  TAAEWDITDK  LEEGENTVAL  EVYRWSSGSY  LECQDMWRLS  GIERDVYLYS240
TPKQYIADYK  VNATLEKERY  KDGIFGLDVA  VEGPANGAVS  ITYTLNDAAG  RPVLSGEMPV300
KSRGLSNFIT  FGEQRLKDVK  PWSAEHPNLY  TLVLELKNAG  GRVTEVTGCE  VGFRTSEIKD360
GRFCINGVPV  LVKGTNRHEH  SQLGRTVSKE  LMEQDIRLMK  LHNINTVRNS  HYPTHPYWYQ420
LCDRYGLYMI  DEANIESHGM  GYGPASLAKD  STWLTAHMDR  THRMYERSKN  HPAIVIWSLG480
NEAGNGINFE  RTYDWLKSVE  KNRPVQYERA  EQNYNTDIYC  RMYRSVDEIK  TYLAQKDIYR540
PFILCEYVHA  MGNSVGGLKE  YWDVFENNPM  AQGGCVWDWV  DQSFREIDAN  GRWYWSYGGD600
YGPKGVPSFG  NFCCNGLVSA  DRVPHPHLLE  VKKIYQNIKC  TLLNKSNLTI  RVKNWFDFSN660
LNEYILHWQV  VGDNGQTVTE  GTKEVNCAPH  ATVDMTLGKV  VLPANVREGY  LNLSWTRKEA720
SPMVGTDWEV  AYDQFVLPGT  KNSTAYLPAK  AGQTAFTLDK  ATGALNSFTL  DGQELLATPV780
TLSLFRPATD  NDNRDRNGAY  LWRKSGFDQL  SQKVVSLKES  KSTATARVEV  LNAKGTKVGD840
ADFIYSLNAA  GALKVKVTFR  PDTAVVKSMA  RLGLAFEMND  TFGNVAYLGR  GDNETYADRM900
QSGKIGLYRT  TAERMFHYYV  TPQSTGNRTD  VRWMKLEDEA  GQGIFVDSNR  PFQFSVVPFT960
DDVLEKARHI  NDLERNGRIT  VHLDAEQAGV  GTATCGPGVQ  PQYRVPLTEQ  SFEFTLRGVK1020
1020

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help