CAZyme3D

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Entry ID

Information for CAZyme ID: QJW88052.1

Basic Information

GenBank IDQJW88052.1
FamilyGH125
Sequence Length483
UniProt IDA0A6M5Y5T2(100,100)Download
Average pLDDT?93.42
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2735870
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma taeanense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRRHFIARS  AGAGVSLLLS  RQSGWATAPT  DFPVVRTTAG  QRNFTSSAVE  QTIERMHKTI60
RDPELAWLFE  NCFPNTLDTT  VQFRNSNAQP  DTFVITGDID  AMWLRDSTAQ  VWPYLPLTKQ120
DPALRQLIAG  VIRRQTQCIL  RDPYANAFYA  EPTKEGEWKK  DFTDMKPGIH  ERKWELDSLC180
YPIRLAYHYW  QTTGDTSPFD  ADWLQAMQLA  LQTCRQQQRK  TTRGPYQFGR  ETAWSTDTVP240
GNGYGNPTRP  IGLIHSIFRP  SDDATVFPFY  VPSNWFTVVS  FRQLATMIDR  IAPTGNAGMD300
LAQFASECRA  LASEVETALK  AHAIINHPKY  GRMYAMEIDG  YGNRLLQDDA  NVPNLLALPY360
LGVCPASDPV  YKNTRRFVLS  PDNPYFFQGK  AAEGIGSPHT  LISSIWPMSI  IMRALTSTDD420
QEILAQLRFL  KKTHAGTGFM  HESFDQDDPA  KFTRKWFAWA  NTLFGELMLK  VAAERPHLLN480
KPL483

Predicted 3D structure by AlphaFold2 with pLDDT = 93.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(62-469)

MNRRHFIARS  AGAGVSLLLS  RQSGWATAPT  DFPVVRTTAG  QRNFTSSAVE  QTIERMHKTI60
RDPELAWLFE  NCFPNTLDTT  VQFRNSNAQP  DTFVITGDID  AMWLRDSTAQ  VWPYLPLTKQ120
DPALRQLIAG  VIRRQTQCIL  RDPYANAFYA  EPTKEGEWKK  DFTDMKPGIH  ERKWELDSLC180
YPIRLAYHYW  QTTGDTSPFD  ADWLQAMQLA  LQTCRQQQRK  TTRGPYQFGR  ETAWSTDTVP240
GNGYGNPTRP  IGLIHSIFRP  SDDATVFPFY  VPSNWFTVVS  FRQLATMIDR  IAPTGNAGMD300
LAQFASECRA  LASEVETALK  AHAIINHPKY  GRMYAMEIDG  YGNRLLQDDA  NVPNLLALPY360
LGVCPASDPV  YKNTRRFVLS  PDNPYFFQGK  AAEGIGSPHT  LISSIWPMSI  IMRALTSTDD420
QEILAQLRFL  KKTHAGTGFM  HESFDQDDPA  KFTRKWFAWA  NTLFGELMLK  VAAERPHLLN480
KPL483

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help