CAZyme3D

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Entry ID

Information for CAZyme ID: QJR55760.1

Basic Information

GenBank IDQJR55760.1
FamilyGH139
Sequence Length743
UniProt IDA0A076IKN0(100,100)Download
Average pLDDT?95.43
CAZy50 ID25511
CAZy50 RepNo, AGA77967.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID357276
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNIFTFLLL  VFIGGQFLWG  QPANLVWNTQ  SRNASESMPC  GGGDIGMNVW  VENDDVLFYL60
SRSGSFDENN  CLLKQGRFRV  RLTPNPFAGT  ASFRQTLHLN  DGYVSVSSDN  ATLIIWVDVF120
HPVVHVEVKT  KELTSMRVNF  ESWRYEDRPV  RKGEGQQCSY  KWAIPDGLMT  KRDSVCVEED180
NFTFFHRNPD  RTIFDVVVDQ  QGMNEVKEQL  YNPLKNLIFG  GRLSGDNLVY  TGTRRGHYAG240
TEYLAWMYKS  KKPVYKQSVH  IALNTEQGTV  PAWEASLART  EKEINVSKDK  QATRRWWNDF300
WKRSFIEGEG  EAGDAIRNYT  LFRYMLGCNA  YSQWPTKFNG  GLFTFDPMYV  DQIMEFTPDF360
RKWGGGTMTA  QNQRLVYWPM  LKSGDFDLMK  SQFDFYLRLL  PTAEARTRAY  WGHAGACFTE420
QMENFGLPNP  AEYGFKRPAS  FDKGLEYNAW  LEYEWDTVLE  FCQMILETAR  YDSLDISCYT480
PLIESSLSFF  DEHYRQLALQ  RGRKDLDGSG  KLVIYPGSAC  ETYKMAYNPS  STIAALRSVL540
QTYRRKPDML  ARIPEIPLRI  VDGKEMIAPA  QVWERVNNIE  TPQLYPVFPW  RIYGVGREGL600
EIARNTYLYD  PDAQKFRSHT  GWKQDNIWAA  CLGMTEEAAQ  LTLEKMANGP  HRFPAFWGPG660
YDWTPDHNWG  GSGMIGMQEM  LLQEADGKIL  LFPAWPKDWN  VHFKLHATGQ  TTVEATLKEG720
AVVSLTVQPK  EREKDVVNCL  LNK743

Predicted 3D structure by AlphaFold2 with pLDDT = 95.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH139(3-740)

MKNIFTFLLL  VFIGGQFLWG  QPANLVWNTQ  SRNASESMPC  GGGDIGMNVW  VENDDVLFYL60
SRSGSFDENN  CLLKQGRFRV  RLTPNPFAGT  ASFRQTLHLN  DGYVSVSSDN  ATLIIWVDVF120
HPVVHVEVKT  KELTSMRVNF  ESWRYEDRPV  RKGEGQQCSY  KWAIPDGLMT  KRDSVCVEED180
NFTFFHRNPD  RTIFDVVVDQ  QGMNEVKEQL  YNPLKNLIFG  GRLSGDNLVY  TGTRRGHYAG240
TEYLAWMYKS  KKPVYKQSVH  IALNTEQGTV  PAWEASLART  EKEINVSKDK  QATRRWWNDF300
WKRSFIEGEG  EAGDAIRNYT  LFRYMLGCNA  YSQWPTKFNG  GLFTFDPMYV  DQIMEFTPDF360
RKWGGGTMTA  QNQRLVYWPM  LKSGDFDLMK  SQFDFYLRLL  PTAEARTRAY  WGHAGACFTE420
QMENFGLPNP  AEYGFKRPAS  FDKGLEYNAW  LEYEWDTVLE  FCQMILETAR  YDSLDISCYT480
PLIESSLSFF  DEHYRQLALQ  RGRKDLDGSG  KLVIYPGSAC  ETYKMAYNPS  STIAALRSVL540
QTYRRKPDML  ARIPEIPLRI  VDGKEMIAPA  QVWERVNNIE  TPQLYPVFPW  RIYGVGREGL600
EIARNTYLYD  PDAQKFRSHT  GWKQDNIWAA  CLGMTEEAAQ  LTLEKMANGP  HRFPAFWGPG660
YDWTPDHNWG  GSGMIGMQEM  LLQEADGKIL  LFPAWPKDWN  VHFKLHATGQ  TTVEATLKEG720
AVVSLTVQPK  EREKDVVNCL  LNK743

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help