Information for CAZyme ID: QJR55760.1
Basic Information
GenBank ID | QJR55760.1 |
Family | GH139 |
Sequence Length | 743 |
UniProt ID | A0A076IKN0(100,100)![]() |
Average pLDDT? | 95.43 |
CAZy50 ID | 25511 |
CAZy50 Rep | No, AGA77967.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 357276 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Bacteroidia |
Order | Bacteroidales |
Family | Bacteroidaceae |
Genus | Phocaeicola |
Species | Phocaeicola dorei |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKNIFTFLLL VFIGGQFLWG QPANLVWNTQ SRNASESMPC GGGDIGMNVW VENDDVLFYL | 60 |
SRSGSFDENN CLLKQGRFRV RLTPNPFAGT ASFRQTLHLN DGYVSVSSDN ATLIIWVDVF | 120 |
HPVVHVEVKT KELTSMRVNF ESWRYEDRPV RKGEGQQCSY KWAIPDGLMT KRDSVCVEED | 180 |
NFTFFHRNPD RTIFDVVVDQ QGMNEVKEQL YNPLKNLIFG GRLSGDNLVY TGTRRGHYAG | 240 |
TEYLAWMYKS KKPVYKQSVH IALNTEQGTV PAWEASLART EKEINVSKDK QATRRWWNDF | 300 |
WKRSFIEGEG EAGDAIRNYT LFRYMLGCNA YSQWPTKFNG GLFTFDPMYV DQIMEFTPDF | 360 |
RKWGGGTMTA QNQRLVYWPM LKSGDFDLMK SQFDFYLRLL PTAEARTRAY WGHAGACFTE | 420 |
QMENFGLPNP AEYGFKRPAS FDKGLEYNAW LEYEWDTVLE FCQMILETAR YDSLDISCYT | 480 |
PLIESSLSFF DEHYRQLALQ RGRKDLDGSG KLVIYPGSAC ETYKMAYNPS STIAALRSVL | 540 |
QTYRRKPDML ARIPEIPLRI VDGKEMIAPA QVWERVNNIE TPQLYPVFPW RIYGVGREGL | 600 |
EIARNTYLYD PDAQKFRSHT GWKQDNIWAA CLGMTEEAAQ LTLEKMANGP HRFPAFWGPG | 660 |
YDWTPDHNWG GSGMIGMQEM LLQEADGKIL LFPAWPKDWN VHFKLHATGQ TTVEATLKEG | 720 |
AVVSLTVQPK EREKDVVNCL LNK | 743 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.43 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH139(3-740)
MKNIFTFLLL VFIGGQFLWG QPANLVWNTQ SRNASESMPC GGGDIGMNVW VENDDVLFYL | 60 |
SRSGSFDENN CLLKQGRFRV RLTPNPFAGT ASFRQTLHLN DGYVSVSSDN ATLIIWVDVF | 120 |
HPVVHVEVKT KELTSMRVNF ESWRYEDRPV RKGEGQQCSY KWAIPDGLMT KRDSVCVEED | 180 |
NFTFFHRNPD RTIFDVVVDQ QGMNEVKEQL YNPLKNLIFG GRLSGDNLVY TGTRRGHYAG | 240 |
TEYLAWMYKS KKPVYKQSVH IALNTEQGTV PAWEASLART EKEINVSKDK QATRRWWNDF | 300 |
WKRSFIEGEG EAGDAIRNYT LFRYMLGCNA YSQWPTKFNG GLFTFDPMYV DQIMEFTPDF | 360 |
RKWGGGTMTA QNQRLVYWPM LKSGDFDLMK SQFDFYLRLL PTAEARTRAY WGHAGACFTE | 420 |
QMENFGLPNP AEYGFKRPAS FDKGLEYNAW LEYEWDTVLE FCQMILETAR YDSLDISCYT | 480 |
PLIESSLSFF DEHYRQLALQ RGRKDLDGSG KLVIYPGSAC ETYKMAYNPS STIAALRSVL | 540 |
QTYRRKPDML ARIPEIPLRI VDGKEMIAPA QVWERVNNIE TPQLYPVFPW RIYGVGREGL | 600 |
EIARNTYLYD PDAQKFRSHT GWKQDNIWAA CLGMTEEAAQ LTLEKMANGP HRFPAFWGPG | 660 |
YDWTPDHNWG GSGMIGMQEM LLQEADGKIL LFPAWPKDWN VHFKLHATGQ TTVEATLKEG | 720 |
AVVSLTVQPK EREKDVVNCL LNK | 743 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.