Information for CAZyme ID: QJR13689.1
Basic Information
GenBank ID | QJR13689.1 |
Family | GH102 |
Sequence Length | 421 |
UniProt ID | A0A6M4H2C0(100,100)![]() |
Average pLDDT? | 86.43 |
CAZy50 ID | 75327 |
CAZy50 Rep | No, CAI08446.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2732487 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Nitrosomonadales |
Family | Usitatibacteraceae |
Genus | Usitatibacter |
Species | Usitatibacter palustris |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MPHRLAVLSI AALLVAACAT PPPPAPKPAP APVVAAPEPE PEPLICPPAP APICPAVPTP | 60 |
TPEVEPRGKL VAGTWAEIPE WGKESLRESV VAFVRGCPSL EKFDAWKAVC AGASTLQVNA | 120 |
TERDLVSFFE LNFDPYRVLN ADDSNAGMVT GYYEPLLHGS KTRSKRYKFP IYATPQDLVT | 180 |
IDLTSVYPDL KHRRLRGRID GNKVVPYLAR GDIDREPAPL KGAELVWVDD AIDVFFLHIQ | 240 |
GSGQVQLENG ERLRVGYADQ NGHPFRSLGR LLIQRGELSA DKASMQGIKD WARRNPKKVQ | 300 |
DYLNANPSYV FFRELPKDLV GPIGSLGVPL TGERSIAVDP RVIPLGVPVF LATTFPNSPQ | 360 |
PLNRLMVAQD TGGAIAGGVR ADFYWGFGDA AGNQAGKMRQ AGRMWVLYPK GYAPPGLNGK | 420 |
K | 421 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.43 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH102(157-313)
MPHRLAVLSI AALLVAACAT PPPPAPKPAP APVVAAPEPE PEPLICPPAP APICPAVPTP | 60 |
TPEVEPRGKL VAGTWAEIPE WGKESLRESV VAFVRGCPSL EKFDAWKAVC AGASTLQVNA | 120 |
TERDLVSFFE LNFDPYRVLN ADDSNAGMVT GYYEPLLHGS KTRSKRYKFP IYATPQDLVT | 180 |
IDLTSVYPDL KHRRLRGRID GNKVVPYLAR GDIDREPAPL KGAELVWVDD AIDVFFLHIQ | 240 |
GSGQVQLENG ERLRVGYADQ NGHPFRSLGR LLIQRGELSA DKASMQGIKD WARRNPKKVQ | 300 |
DYLNANPSYV FFRELPKDLV GPIGSLGVPL TGERSIAVDP RVIPLGVPVF LATTFPNSPQ | 360 |
PLNRLMVAQD TGGAIAGGVR ADFYWGFGDA AGNQAGKMRQ AGRMWVLYPK GYAPPGLNGK | 420 |
K | 421 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.