CAZyme3D

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Entry ID

Information for CAZyme ID: QJR13689.1

Basic Information

GenBank IDQJR13689.1
FamilyGH102
Sequence Length421
UniProt IDA0A6M4H2C0(100,100)Download
Average pLDDT?86.43
CAZy50 ID75327
CAZy50 RepNo, CAI08446.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2732487
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyUsitatibacteraceae
GenusUsitatibacter
SpeciesUsitatibacter palustris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPHRLAVLSI  AALLVAACAT  PPPPAPKPAP  APVVAAPEPE  PEPLICPPAP  APICPAVPTP60
TPEVEPRGKL  VAGTWAEIPE  WGKESLRESV  VAFVRGCPSL  EKFDAWKAVC  AGASTLQVNA120
TERDLVSFFE  LNFDPYRVLN  ADDSNAGMVT  GYYEPLLHGS  KTRSKRYKFP  IYATPQDLVT180
IDLTSVYPDL  KHRRLRGRID  GNKVVPYLAR  GDIDREPAPL  KGAELVWVDD  AIDVFFLHIQ240
GSGQVQLENG  ERLRVGYADQ  NGHPFRSLGR  LLIQRGELSA  DKASMQGIKD  WARRNPKKVQ300
DYLNANPSYV  FFRELPKDLV  GPIGSLGVPL  TGERSIAVDP  RVIPLGVPVF  LATTFPNSPQ360
PLNRLMVAQD  TGGAIAGGVR  ADFYWGFGDA  AGNQAGKMRQ  AGRMWVLYPK  GYAPPGLNGK420
K421

Predicted 3D structure by AlphaFold2 with pLDDT = 86.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(157-313)

MPHRLAVLSI  AALLVAACAT  PPPPAPKPAP  APVVAAPEPE  PEPLICPPAP  APICPAVPTP60
TPEVEPRGKL  VAGTWAEIPE  WGKESLRESV  VAFVRGCPSL  EKFDAWKAVC  AGASTLQVNA120
TERDLVSFFE  LNFDPYRVLN  ADDSNAGMVT  GYYEPLLHGS  KTRSKRYKFP  IYATPQDLVT180
IDLTSVYPDL  KHRRLRGRID  GNKVVPYLAR  GDIDREPAPL  KGAELVWVDD  AIDVFFLHIQ240
GSGQVQLENG  ERLRVGYADQ  NGHPFRSLGR  LLIQRGELSA  DKASMQGIKD  WARRNPKKVQ300
DYLNANPSYV  FFRELPKDLV  GPIGSLGVPL  TGERSIAVDP  RVIPLGVPVF  LATTFPNSPQ360
PLNRLMVAQD  TGGAIAGGVR  ADFYWGFGDA  AGNQAGKMRQ  AGRMWVLYPK  GYAPPGLNGK420
K421

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help