Information for CAZyme ID: QJR03853.1
Basic Information
| GenBank ID | QJR03853.1 |
| Family | CE4, GH18, GT2 |
| Sequence Length | 1109 |
| UniProt ID | A0A6M4GC47(100,100) |
| Average pLDDT? | 86.01 |
| CAZy50 ID | 9192 |
| CAZy50 Rep | No, QCI94295.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 13690 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTRPIFFDPT GRRGIWARRA LAALLCAIIA ATIAFATTLI AVPSEGDLAL PLPQPRAAHL | 60 |
| TGMSRLRHDL SKWLPRWPGH VAQARPLNVG FYVPDDESSI ASLRRHVGQL DWVVPALVTV | 120 |
| PGDDPTPRFH ADPRLDQMIA SMGRPPKLLP MVQNLDAHGW NGAGTARLLA NPAASRQLAQ | 180 |
| RLAASVAAHH DAGLVMDFES LPSGALPAYL HFLRQLRSDL PARAKLAVTA PAGEEWPLAR | 240 |
| LGQIADHVIF MAYDQHWQGG TPGPIAAQDW FARAVEDASR RIGRDRIIVA LGSYGYDWHD | 300 |
| GGADALSLDE AWLAAHDSDA PVSFDPASGN AGFAYDDDGH RHQVWMLDAA ASWNELQALR | 360 |
| RLGIQGVALW RLGSEDPGIW SDLTAFRNGS RPDLRQVASK LDTDVEGSGE ILRITATPTD | 420 |
| GSRSIAFGPQ GTILRETYHV LPTPYQVRRT GGAQAKMLAL TFDDGPDATW TPKILSVLEQ | 480 |
| HHVPGTFFVI GENALEHPGL LQRIVADGDE IGNHSYSHPN LATWSDESTR LELNATQRLV | 540 |
| QAYTGRSMKL FRAPYFGDAE PTTADELGPA LAAQKAGYTV VGLHVDPNDW QRPGTDTIVR | 600 |
| QVIDQVHAAD ADRSGNIILL HDGGGERSQT VAALPQIITT LQKEGYRFVP VSRLAGLSRE | 660 |
| AAMPPVRAGD LTAVRVDVGM FITLAVISAL LGWIFYVAIS LGIARALLMT FLAWFQTRRD | 720 |
| RPAPPVYQPT VSVIIPAYNE ARVIEASVRR VLASDYPALQ LIVADDGSKD ETSAIVARAF | 780 |
| ADDPRVTLLT LQNGGKAAAL NRALTEATGE ILIALDADTQ FEPLTIARLA RWFADPAIGA | 840 |
| VAGDARVGNR VNLVTRWQAL EYITAQNLER RALAGFDAMT VVPGAVGAWR RTALDAVGGY | 900 |
| PEDTLAEDQD LTIAIQRAGW RVTFDPEAIA WTEAPESFKA LSKQRYRWAF GTLQCLWKHA | 960 |
| AILRSRKPTG LALVGMPQAW LFQIVFAAIS PLIDLALLLS IAGTILRVQQ HGWAQTSGDV | 1020 |
| ATMALYWLVF TGIDIACGWM AYRLDGNKVR YPAHLLVAQR FVYRQIMYWV VVRAIVSAIG | 1080 |
| GWVVGWGKLE RSGRVSVTPA AAVPGMNKV | 1109 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.01 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH18(159-374)+CE4(454-568)+GT2(729-951)
| MTRPIFFDPT GRRGIWARRA LAALLCAIIA ATIAFATTLI AVPSEGDLAL PLPQPRAAHL | 60 |
| TGMSRLRHDL SKWLPRWPGH VAQARPLNVG FYVPDDESSI ASLRRHVGQL DWVVPALVTV | 120 |
| PGDDPTPRFH ADPRLDQMIA SMGRPPKLLP MVQNLDAHGW NGAGTARLLA NPAASRQLAQ | 180 |
| RLAASVAAHH DAGLVMDFES LPSGALPAYL HFLRQLRSDL PARAKLAVTA PAGEEWPLAR | 240 |
| LGQIADHVIF MAYDQHWQGG TPGPIAAQDW FARAVEDASR RIGRDRIIVA LGSYGYDWHD | 300 |
| GGADALSLDE AWLAAHDSDA PVSFDPASGN AGFAYDDDGH RHQVWMLDAA ASWNELQALR | 360 |
| RLGIQGVALW RLGSEDPGIW SDLTAFRNGS RPDLRQVASK LDTDVEGSGE ILRITATPTD | 420 |
| GSRSIAFGPQ GTILRETYHV LPTPYQVRRT GGAQAKMLAL TFDDGPDATW TPKILSVLEQ | 480 |
| HHVPGTFFVI GENALEHPGL LQRIVADGDE IGNHSYSHPN LATWSDESTR LELNATQRLV | 540 |
| QAYTGRSMKL FRAPYFGDAE PTTADELGPA LAAQKAGYTV VGLHVDPNDW QRPGTDTIVR | 600 |
| QVIDQVHAAD ADRSGNIILL HDGGGERSQT VAALPQIITT LQKEGYRFVP VSRLAGLSRE | 660 |
| AAMPPVRAGD LTAVRVDVGM FITLAVISAL LGWIFYVAIS LGIARALLMT FLAWFQTRRD | 720 |
| RPAPPVYQPT VSVIIPAYNE ARVIEASVRR VLASDYPALQ LIVADDGSKD ETSAIVARAF | 780 |
| ADDPRVTLLT LQNGGKAAAL NRALTEATGE ILIALDADTQ FEPLTIARLA RWFADPAIGA | 840 |
| VAGDARVGNR VNLVTRWQAL EYITAQNLER RALAGFDAMT VVPGAVGAWR RTALDAVGGY | 900 |
| PEDTLAEDQD LTIAIQRAGW RVTFDPEAIA WTEAPESFKA LSKQRYRWAF GTLQCLWKHA | 960 |
| AILRSRKPTG LALVGMPQAW LFQIVFAAIS PLIDLALLLS IAGTILRVQQ HGWAQTSGDV | 1020 |
| ATMALYWLVF TGIDIACGWM AYRLDGNKVR YPAHLLVAQR FVYRQIMYWV VVRAIVSAIG | 1080 |
| GWVVGWGKLE RSGRVSVTPA AAVPGMNKV | 1109 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.