CAZyme3D

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Entry ID

Information for CAZyme ID: QJR03745.1

Basic Information

GenBank IDQJR03745.1
FamilyGH55
Sequence Length1007
UniProt IDA0A6M4G943(100,100)Download
Average pLDDT?93.24
CAZy50 ID11192
CAZy50 RepNo, QAY79720.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID13690
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIGRSMIAAL  LAATSIGVPA  FAATTSVFPV  APAEPHAVTV  KAVGDGRADD  SAAIQQALDQ60
ARDATGHGIV  FLPSGTYRIT  RSLIVPAGVR  VYGVGPTRPV  LLLGANTPGF  QQGVSTMVIF120
AGGDQYQVGK  VPVPVPTVVP  RDKIVRDANS  GTFYSSMSNV  DIEIGAGNPA  AAGVRFRMAQ180
HAFLSHMEFR  LGTAFAGVYQ  AGNVIENVHF  QGGRYGIVTE  KTSPAWQFTL  LDSSFDGQRD240
AAIREHEVDL  TLVNVAIKNT  PVGIEIDRGY  SDSLWGKDVR  FENVSRAGVV  ISNEKNVFTQ300
VGFDNALAVN  SPVFARFRDS  GRTIDGKGKT  YKVANFSYGL  AVPALGHTGD  YATTADIQPL360
SAMPAPRASA  IRDLPPMEQW  VNVRTLGAVG  DGKADDTAAL  QKAIDANRIL  YFPTGFYKVT420
DRLTLRPDSI  LIGLHPAITQ  LFIPDNNPKH  AGLGAVLPIL  ESRKGGDNIL  SGLGLFTGRV480
NPRASALLWR  SGEQSLVEDV  KIMGGGGTPT  ADGKMLGTLR  VNTGDPVTDS  RLDAQYPSIW540
VTDGGGGTFA  DVWSPNSFAQ  AGFYITDTDT  PGHVYEMSVE  HHARNEIVLD  NVRNWEFLAP600
QTEQEVDDGP  DAISLDIRNS  SNLLFANYHG  YRVTRTYAPE  KSAVKITNSG  NIRFRNVHVN660
GESGYATCDD  EGCGTFLRAS  KYPFDNAIED  VSRKLLVRER  EFAALDIGPA  GSAVPAVAPS720
GTKVEKLEDG  FWSISGAAVD  AQGQLYFIDR  RFQRIHRWSE  GKGLEIVRDH  ALDPVNLAID780
ASGHVMVLSS  LGAKGGAYSF  DPAGPKDALT  LIQPTPVRSS  GAAKTLLPVN  WWNNGEFRDQ840
LDPKTYEFTT  LAEMFARDVG  TPKAKEYVSP  DGSLSLPAFR  VWQQGPIDHT  GWRWSDGLNA900
NGFVSGKIGD  RLFVTNGSEN  ITYSGTVGPG  GTLTGLKPFA  NRGGESVAVD  GQGRVFVANG960
QIFVYGPDGK  ESGRIDVPDR  PLQILFGGPD  KRTLFILTHH  ALYAAKP1007

Predicted 3D structure by AlphaFold2 with pLDDT = 93.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH55(149-606)

MIGRSMIAAL  LAATSIGVPA  FAATTSVFPV  APAEPHAVTV  KAVGDGRADD  SAAIQQALDQ60
ARDATGHGIV  FLPSGTYRIT  RSLIVPAGVR  VYGVGPTRPV  LLLGANTPGF  QQGVSTMVIF120
AGGDQYQVGK  VPVPVPTVVP  RDKIVRDANS  GTFYSSMSNV  DIEIGAGNPA  AAGVRFRMAQ180
HAFLSHMEFR  LGTAFAGVYQ  AGNVIENVHF  QGGRYGIVTE  KTSPAWQFTL  LDSSFDGQRD240
AAIREHEVDL  TLVNVAIKNT  PVGIEIDRGY  SDSLWGKDVR  FENVSRAGVV  ISNEKNVFTQ300
VGFDNALAVN  SPVFARFRDS  GRTIDGKGKT  YKVANFSYGL  AVPALGHTGD  YATTADIQPL360
SAMPAPRASA  IRDLPPMEQW  VNVRTLGAVG  DGKADDTAAL  QKAIDANRIL  YFPTGFYKVT420
DRLTLRPDSI  LIGLHPAITQ  LFIPDNNPKH  AGLGAVLPIL  ESRKGGDNIL  SGLGLFTGRV480
NPRASALLWR  SGEQSLVEDV  KIMGGGGTPT  ADGKMLGTLR  VNTGDPVTDS  RLDAQYPSIW540
VTDGGGGTFA  DVWSPNSFAQ  AGFYITDTDT  PGHVYEMSVE  HHARNEIVLD  NVRNWEFLAP600
QTEQEVDDGP  DAISLDIRNS  SNLLFANYHG  YRVTRTYAPE  KSAVKITNSG  NIRFRNVHVN660
GESGYATCDD  EGCGTFLRAS  KYPFDNAIED  VSRKLLVRER  EFAALDIGPA  GSAVPAVAPS720
GTKVEKLEDG  FWSISGAAVD  AQGQLYFIDR  RFQRIHRWSE  GKGLEIVRDH  ALDPVNLAID780
ASGHVMVLSS  LGAKGGAYSF  DPAGPKDALT  LIQPTPVRSS  GAAKTLLPVN  WWNNGEFRDQ840
LDPKTYEFTT  LAEMFARDVG  TPKAKEYVSP  DGSLSLPAFR  VWQQGPIDHT  GWRWSDGLNA900
NGFVSGKIGD  RLFVTNGSEN  ITYSGTVGPG  GTLTGLKPFA  NRGGESVAVD  GQGRVFVANG960
QIFVYGPDGK  ESGRIDVPDR  PLQILFGGPD  KRTLFILTHH  ALYAAKP1007

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help