Information for CAZyme ID: QJR03745.1
Basic Information
GenBank ID | QJR03745.1 |
Family | GH55 |
Sequence Length | 1007 |
UniProt ID | A0A6M4G943(100,100)![]() |
Average pLDDT? | 93.24 |
CAZy50 ID | 11192 |
CAZy50 Rep | No, QAY79720.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 13690 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Sphingomonadales |
Family | Sphingomonadaceae |
Genus | Sphingobium |
Species | Sphingobium yanoikuyae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MIGRSMIAAL LAATSIGVPA FAATTSVFPV APAEPHAVTV KAVGDGRADD SAAIQQALDQ | 60 |
ARDATGHGIV FLPSGTYRIT RSLIVPAGVR VYGVGPTRPV LLLGANTPGF QQGVSTMVIF | 120 |
AGGDQYQVGK VPVPVPTVVP RDKIVRDANS GTFYSSMSNV DIEIGAGNPA AAGVRFRMAQ | 180 |
HAFLSHMEFR LGTAFAGVYQ AGNVIENVHF QGGRYGIVTE KTSPAWQFTL LDSSFDGQRD | 240 |
AAIREHEVDL TLVNVAIKNT PVGIEIDRGY SDSLWGKDVR FENVSRAGVV ISNEKNVFTQ | 300 |
VGFDNALAVN SPVFARFRDS GRTIDGKGKT YKVANFSYGL AVPALGHTGD YATTADIQPL | 360 |
SAMPAPRASA IRDLPPMEQW VNVRTLGAVG DGKADDTAAL QKAIDANRIL YFPTGFYKVT | 420 |
DRLTLRPDSI LIGLHPAITQ LFIPDNNPKH AGLGAVLPIL ESRKGGDNIL SGLGLFTGRV | 480 |
NPRASALLWR SGEQSLVEDV KIMGGGGTPT ADGKMLGTLR VNTGDPVTDS RLDAQYPSIW | 540 |
VTDGGGGTFA DVWSPNSFAQ AGFYITDTDT PGHVYEMSVE HHARNEIVLD NVRNWEFLAP | 600 |
QTEQEVDDGP DAISLDIRNS SNLLFANYHG YRVTRTYAPE KSAVKITNSG NIRFRNVHVN | 660 |
GESGYATCDD EGCGTFLRAS KYPFDNAIED VSRKLLVRER EFAALDIGPA GSAVPAVAPS | 720 |
GTKVEKLEDG FWSISGAAVD AQGQLYFIDR RFQRIHRWSE GKGLEIVRDH ALDPVNLAID | 780 |
ASGHVMVLSS LGAKGGAYSF DPAGPKDALT LIQPTPVRSS GAAKTLLPVN WWNNGEFRDQ | 840 |
LDPKTYEFTT LAEMFARDVG TPKAKEYVSP DGSLSLPAFR VWQQGPIDHT GWRWSDGLNA | 900 |
NGFVSGKIGD RLFVTNGSEN ITYSGTVGPG GTLTGLKPFA NRGGESVAVD GQGRVFVANG | 960 |
QIFVYGPDGK ESGRIDVPDR PLQILFGGPD KRTLFILTHH ALYAAKP | 1007 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.24 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH55(149-606)
MIGRSMIAAL LAATSIGVPA FAATTSVFPV APAEPHAVTV KAVGDGRADD SAAIQQALDQ | 60 |
ARDATGHGIV FLPSGTYRIT RSLIVPAGVR VYGVGPTRPV LLLGANTPGF QQGVSTMVIF | 120 |
AGGDQYQVGK VPVPVPTVVP RDKIVRDANS GTFYSSMSNV DIEIGAGNPA AAGVRFRMAQ | 180 |
HAFLSHMEFR LGTAFAGVYQ AGNVIENVHF QGGRYGIVTE KTSPAWQFTL LDSSFDGQRD | 240 |
AAIREHEVDL TLVNVAIKNT PVGIEIDRGY SDSLWGKDVR FENVSRAGVV ISNEKNVFTQ | 300 |
VGFDNALAVN SPVFARFRDS GRTIDGKGKT YKVANFSYGL AVPALGHTGD YATTADIQPL | 360 |
SAMPAPRASA IRDLPPMEQW VNVRTLGAVG DGKADDTAAL QKAIDANRIL YFPTGFYKVT | 420 |
DRLTLRPDSI LIGLHPAITQ LFIPDNNPKH AGLGAVLPIL ESRKGGDNIL SGLGLFTGRV | 480 |
NPRASALLWR SGEQSLVEDV KIMGGGGTPT ADGKMLGTLR VNTGDPVTDS RLDAQYPSIW | 540 |
VTDGGGGTFA DVWSPNSFAQ AGFYITDTDT PGHVYEMSVE HHARNEIVLD NVRNWEFLAP | 600 |
QTEQEVDDGP DAISLDIRNS SNLLFANYHG YRVTRTYAPE KSAVKITNSG NIRFRNVHVN | 660 |
GESGYATCDD EGCGTFLRAS KYPFDNAIED VSRKLLVRER EFAALDIGPA GSAVPAVAPS | 720 |
GTKVEKLEDG FWSISGAAVD AQGQLYFIDR RFQRIHRWSE GKGLEIVRDH ALDPVNLAID | 780 |
ASGHVMVLSS LGAKGGAYSF DPAGPKDALT LIQPTPVRSS GAAKTLLPVN WWNNGEFRDQ | 840 |
LDPKTYEFTT LAEMFARDVG TPKAKEYVSP DGSLSLPAFR VWQQGPIDHT GWRWSDGLNA | 900 |
NGFVSGKIGD RLFVTNGSEN ITYSGTVGPG GTLTGLKPFA NRGGESVAVD GQGRVFVANG | 960 |
QIFVYGPDGK ESGRIDVPDR PLQILFGGPD KRTLFILTHH ALYAAKP | 1007 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.