CAZyme3D

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Entry ID

Information for CAZyme ID: QJP15143.1

Basic Information

GenBank IDQJP15143.1
FamilyGT51
Sequence Length684
UniProt IDA0A858WZ29(100,100)Download
Average pLDDT?83.03
CAZy50 ID16925
CAZy50 RepNo, BCP55952.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2709380
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusStarkeya
SpeciesStarkeya sp. ORNL1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTANRGSRPF  PPALPLPVVK  PRARSRTAPR  RKRGWRRLFY  WVFVLGLWGV  IGLTGLVAYE60
ASQLPAIQNL  AIPERPPTVI  IQAQDGKTIA  ARGDMRGAAV  PLRALPPYLP  QAFIAIEDRR120
FYSHFGIDLL  GLARAVVVNL  TSGRLREGGS  TLTQQLAKNL  FLTQERTLSR  KIQEVILALW180
LEAKYSKNEI  VELYVNRVYF  GAGAYGVEAA  AQRYFGKSAR  QVTLSEAAML  AGLVKSPSAL240
APTRNLKGAQ  ERAELVIAAM  QDAGFITPAM  AATATARPAV  LAKNQSQEPA  AYAADWIMEQ300
LEPLIGTIEH  DVIVQTSLDS  NMQAAAEKAL  TDSLNRNGAR  YGVEQGAIVL  MDTDGAVKAL360
VGGKSYEDSQ  YNRAVSARRQ  PGSAFKPFVY  LTALERGLTP  DSVREDAPIK  LKGWKPENFS420
HEYRGPVTLT  TALSLSLNTV  AVRLALEVGP  AEVAKTAKRL  GITSKLDPNP  SIALGTSEVS480
PLEMAAAYAP  FANGGIGVTP  HIIDRVRDAK  GKILYSYAGQ  NRGQVMAPPH  VAMMNRMLRE540
TLVTGTARRA  ELPGWPAAGK  TGTSQDFRDA  WFVGYTSRYI  TSVWLGNDDS  SPTKKASGSG600
LPVEIWSRVM  RTAHDGVPIA  PLPGGDYMQD  YGPPPAGDVP  EEPVVTGGPS  YYPRPPGDVG660
GDTPASRAPG  LDNWLLDKLF  GGNG684

Predicted 3D structure by AlphaFold2 with pLDDT = 83.03 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(86-261)

MTANRGSRPF  PPALPLPVVK  PRARSRTAPR  RKRGWRRLFY  WVFVLGLWGV  IGLTGLVAYE60
ASQLPAIQNL  AIPERPPTVI  IQAQDGKTIA  ARGDMRGAAV  PLRALPPYLP  QAFIAIEDRR120
FYSHFGIDLL  GLARAVVVNL  TSGRLREGGS  TLTQQLAKNL  FLTQERTLSR  KIQEVILALW180
LEAKYSKNEI  VELYVNRVYF  GAGAYGVEAA  AQRYFGKSAR  QVTLSEAAML  AGLVKSPSAL240
APTRNLKGAQ  ERAELVIAAM  QDAGFITPAM  AATATARPAV  LAKNQSQEPA  AYAADWIMEQ300
LEPLIGTIEH  DVIVQTSLDS  NMQAAAEKAL  TDSLNRNGAR  YGVEQGAIVL  MDTDGAVKAL360
VGGKSYEDSQ  YNRAVSARRQ  PGSAFKPFVY  LTALERGLTP  DSVREDAPIK  LKGWKPENFS420
HEYRGPVTLT  TALSLSLNTV  AVRLALEVGP  AEVAKTAKRL  GITSKLDPNP  SIALGTSEVS480
PLEMAAAYAP  FANGGIGVTP  HIIDRVRDAK  GKILYSYAGQ  NRGQVMAPPH  VAMMNRMLRE540
TLVTGTARRA  ELPGWPAAGK  TGTSQDFRDA  WFVGYTSRYI  TSVWLGNDDS  SPTKKASGSG600
LPVEIWSRVM  RTAHDGVPIA  PLPGGDYMQD  YGPPPAGDVP  EEPVVTGGPS  YYPRPPGDVG660
GDTPASRAPG  LDNWLLDKLF  GGNG684

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help