CAZyme3D

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Entry ID

Information for CAZyme ID: QJP11059.1

Basic Information

GenBank IDQJP11059.1
FamilyGH50
Sequence Length760
UniProt IDA0A7Z3GSR4(100,100)Download
Average pLDDT?91.36
CAZy50 ID25089
CAZy50 RepNo, BBP81741.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID95301
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas multiresinivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTSMRWHLPL  LLSLAIASAP  AWSAGGNETL  FNFVKPMAVV  SITTQNADLP  SSTAEATPEG60
EILRRVNFNP  APQPTLRLAP  SSDSWDWSQS  DSMSLRVQNA  MDWAITLEVE  IEGVAGAPGL120
RASIALPPGP  AQTLVIPLHA  ISPEDFGMRA  GVPMPVTQDG  QRLLLASKVS  GELNRSQVGA180
VKLFLTSPKA  AQDILVGRFG  TRAGNDEYHK  AYTGIVDGFG  QSTRSDWPEK  VKSAEQLANA240
WKGEGEQLSK  WKPAPGRDAF  GGLLDGPAFE  GTGFFRTEKR  NGRWWLVTPE  GHSFWSMGVN300
AVNADSSQTY  VEGREYMFAS  LPKEDEPLAA  FYGQRDDRSG  VGAQQGRAFG  NGRWFDFYAA360
NRFRADGGLT  GDAAAAAWRE  RTVQRLGSWG  FNTLGDWSDP  AFADDPRMPY  SVPLSISGDY420
ATVSTGYDWW  GAMPDPFDPR  FAMAAERAIA  IAARDHREDA  WLLGYYADNE  LAWAGRGDDD480
QAHFALAFGT  LKLSTDSPAK  RAFIKQLKDK  YEDHEQLAEA  WGVQLGSWED  LDAPGYQAPV540
PSEAHPAIAQ  DYSAFLRLYA  DQYFKTLKDS  LQWHAPNHLL  LGPRFAVSTP  EALASCAQYC600
DILSFNLYVP  LPQQGFDANY  VRSLDKPVLI  TEFHFGSRDR  GPFWGGVAEV  YNEQQRGEAY660
QRFLAEAAKQ  PNIVGAHWFQ  YLDQPVTGRL  LDGENGHIGL  VGITDLPFTG  FVDAVRKANQ720
QTLKGIDELA  RAAAKVAPEP  QPKPAPASDD  SDDEEQASEQ  760

Predicted 3D structure by AlphaFold2 with pLDDT = 91.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(82-721)

MTSMRWHLPL  LLSLAIASAP  AWSAGGNETL  FNFVKPMAVV  SITTQNADLP  SSTAEATPEG60
EILRRVNFNP  APQPTLRLAP  SSDSWDWSQS  DSMSLRVQNA  MDWAITLEVE  IEGVAGAPGL120
RASIALPPGP  AQTLVIPLHA  ISPEDFGMRA  GVPMPVTQDG  QRLLLASKVS  GELNRSQVGA180
VKLFLTSPKA  AQDILVGRFG  TRAGNDEYHK  AYTGIVDGFG  QSTRSDWPEK  VKSAEQLANA240
WKGEGEQLSK  WKPAPGRDAF  GGLLDGPAFE  GTGFFRTEKR  NGRWWLVTPE  GHSFWSMGVN300
AVNADSSQTY  VEGREYMFAS  LPKEDEPLAA  FYGQRDDRSG  VGAQQGRAFG  NGRWFDFYAA360
NRFRADGGLT  GDAAAAAWRE  RTVQRLGSWG  FNTLGDWSDP  AFADDPRMPY  SVPLSISGDY420
ATVSTGYDWW  GAMPDPFDPR  FAMAAERAIA  IAARDHREDA  WLLGYYADNE  LAWAGRGDDD480
QAHFALAFGT  LKLSTDSPAK  RAFIKQLKDK  YEDHEQLAEA  WGVQLGSWED  LDAPGYQAPV540
PSEAHPAIAQ  DYSAFLRLYA  DQYFKTLKDS  LQWHAPNHLL  LGPRFAVSTP  EALASCAQYC600
DILSFNLYVP  LPQQGFDANY  VRSLDKPVLI  TEFHFGSRDR  GPFWGGVAEV  YNEQQRGEAY660
QRFLAEAAKQ  PNIVGAHWFQ  YLDQPVTGRL  LDGENGHIGL  VGITDLPFTG  FVDAVRKANQ720
QTLKGIDELA  RAAAKVAPEP  QPKPAPASDD  SDDEEQASEQ  760

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help