Information for CAZyme ID: QJI29192.1
Basic Information
GenBank ID | QJI29192.1 |
Family | GH13_16 |
Sequence Length | 1115 |
UniProt ID | A0A7Z2XBF2(100,100)![]() |
Average pLDDT? | 88.10 |
CAZy50 ID | 6873 |
CAZy50 Rep | No, ALD93392.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2730848 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Pseudomonadales |
Family | Pseudomonadaceae |
Genus | Pseudomonas |
Species | Pseudomonas sp. ADAK18 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MAKKPKAATF IKDPLWYKDA VIYQVHVKSY FDSNNDGIGD FPGLITKLDY IAELGVNTIW | 60 |
LLPFYPSPRR DDGYDIAEYR GVHSDYGTMA DARRFIAEAH KRGLRVITEL VINHTSDQHP | 120 |
WFQRARKAKP GSKARDFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ | 180 |
PDLNFDNPQV MKAVLSVMRY WLDMGIDGLR LDAIPYLIER DGTNNENLPE THDVLKQIRA | 240 |
EIDANYPDRM LLAEANQWPE DTQLYFGDKK GDDGDECHMA FHFPLMPRMY MALAQEDRFP | 300 |
ITDILRQTPE IPANCQWAIF LRNHDELTLE MVTDKERDYL WNYYAADRRA RINLGIRRRL | 360 |
APLMERDRRR VELLNSLLLS MPGTPTLYYG DEIGMGDNIY LGDRDGVRTP MQWSIDRNGG | 420 |
FSRADPASLV LPPIMDPLYG YQSVNVETQA QDPHSLLNWT RRMLAIRKQS KAFGRGSLKM | 480 |
LSPTNRRILA YTREYTGDDG RQEIILCVAN VSRSAQAAEL DLSAFAGMVP VEMLGGNAFP | 540 |
PIGQLTFLLT LAPYGFYWFV LAAENQMPSW HVEPAQSIPD FTTLVLKKRM EELLEAPCRT | 600 |
TLEQTSLPAW LPKRRWFANK DSAIDNVHIA YGVRFGDPLH PVLLSEIEVT TGGQVSRYQL | 660 |
PLGFLAEEQY TSALPQQLAL ARVRRVRQVG LVTDAFSLDT YIRAVIHGLQ ATTVLHSTDG | 720 |
DIRFESAAQL AQLELTDESD VRYLAAEQSN SSVVVGGSLV LKLIRKVSAG VHPELEMGAY | 780 |
LTAAGYEHIS PLLGSVIRRD AEGQDSLLMI AQGYLSNQGD AWGWTQNNLE RAIRDELAEA | 840 |
ISEQEQHYNA LGELADFAGM LGQRLGEMHQ VLAAPTANKD FKPEVTSLKD SQGWAKQVGA | 900 |
QIDRALQLLK HHQGKLSAAD QALVSALLDQ KKLIASHVQA LAKATVGGLR IRVHGDLHLG | 960 |
QVLVVKGDAY LIDFEGEPAR PLHERRGKHS PYKDVSGVLR SFDYAAAMAL NVQGVDHSPE | 1020 |
ANAARQRVAD RYLSEARQAF IQAYHEATTT LAHDWQDAKG QDAALTLFSL EKAAYEVAYE | 1080 |
AENRPTWLPV PLQGLHGLLS GLKPVSKTAR GGETS | 1115 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.10 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH13_16(39-397)
MAKKPKAATF IKDPLWYKDA VIYQVHVKSY FDSNNDGIGD FPGLITKLDY IAELGVNTIW | 60 |
LLPFYPSPRR DDGYDIAEYR GVHSDYGTMA DARRFIAEAH KRGLRVITEL VINHTSDQHP | 120 |
WFQRARKAKP GSKARDFYVW SDDDQKYDGT RIIFLDTEKS NWTWDPVAGQ YFWHRFYSHQ | 180 |
PDLNFDNPQV MKAVLSVMRY WLDMGIDGLR LDAIPYLIER DGTNNENLPE THDVLKQIRA | 240 |
EIDANYPDRM LLAEANQWPE DTQLYFGDKK GDDGDECHMA FHFPLMPRMY MALAQEDRFP | 300 |
ITDILRQTPE IPANCQWAIF LRNHDELTLE MVTDKERDYL WNYYAADRRA RINLGIRRRL | 360 |
APLMERDRRR VELLNSLLLS MPGTPTLYYG DEIGMGDNIY LGDRDGVRTP MQWSIDRNGG | 420 |
FSRADPASLV LPPIMDPLYG YQSVNVETQA QDPHSLLNWT RRMLAIRKQS KAFGRGSLKM | 480 |
LSPTNRRILA YTREYTGDDG RQEIILCVAN VSRSAQAAEL DLSAFAGMVP VEMLGGNAFP | 540 |
PIGQLTFLLT LAPYGFYWFV LAAENQMPSW HVEPAQSIPD FTTLVLKKRM EELLEAPCRT | 600 |
TLEQTSLPAW LPKRRWFANK DSAIDNVHIA YGVRFGDPLH PVLLSEIEVT TGGQVSRYQL | 660 |
PLGFLAEEQY TSALPQQLAL ARVRRVRQVG LVTDAFSLDT YIRAVIHGLQ ATTVLHSTDG | 720 |
DIRFESAAQL AQLELTDESD VRYLAAEQSN SSVVVGGSLV LKLIRKVSAG VHPELEMGAY | 780 |
LTAAGYEHIS PLLGSVIRRD AEGQDSLLMI AQGYLSNQGD AWGWTQNNLE RAIRDELAEA | 840 |
ISEQEQHYNA LGELADFAGM LGQRLGEMHQ VLAAPTANKD FKPEVTSLKD SQGWAKQVGA | 900 |
QIDRALQLLK HHQGKLSAAD QALVSALLDQ KKLIASHVQA LAKATVGGLR IRVHGDLHLG | 960 |
QVLVVKGDAY LIDFEGEPAR PLHERRGKHS PYKDVSGVLR SFDYAAAMAL NVQGVDHSPE | 1020 |
ANAARQRVAD RYLSEARQAF IQAYHEATTT LAHDWQDAKG QDAALTLFSL EKAAYEVAYE | 1080 |
AENRPTWLPV PLQGLHGLLS GLKPVSKTAR GGETS | 1115 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.