CAZyme3D

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Entry ID

Information for CAZyme ID: QJI29192.1

Basic Information

GenBank IDQJI29192.1
FamilyGH13_16
Sequence Length1115
UniProt IDA0A7Z2XBF2(100,100)Download
Average pLDDT?88.10
CAZy50 ID6873
CAZy50 RepNo, ALD93392.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2730848
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ADAK18

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKKPKAATF  IKDPLWYKDA  VIYQVHVKSY  FDSNNDGIGD  FPGLITKLDY  IAELGVNTIW60
LLPFYPSPRR  DDGYDIAEYR  GVHSDYGTMA  DARRFIAEAH  KRGLRVITEL  VINHTSDQHP120
WFQRARKAKP  GSKARDFYVW  SDDDQKYDGT  RIIFLDTEKS  NWTWDPVAGQ  YFWHRFYSHQ180
PDLNFDNPQV  MKAVLSVMRY  WLDMGIDGLR  LDAIPYLIER  DGTNNENLPE  THDVLKQIRA240
EIDANYPDRM  LLAEANQWPE  DTQLYFGDKK  GDDGDECHMA  FHFPLMPRMY  MALAQEDRFP300
ITDILRQTPE  IPANCQWAIF  LRNHDELTLE  MVTDKERDYL  WNYYAADRRA  RINLGIRRRL360
APLMERDRRR  VELLNSLLLS  MPGTPTLYYG  DEIGMGDNIY  LGDRDGVRTP  MQWSIDRNGG420
FSRADPASLV  LPPIMDPLYG  YQSVNVETQA  QDPHSLLNWT  RRMLAIRKQS  KAFGRGSLKM480
LSPTNRRILA  YTREYTGDDG  RQEIILCVAN  VSRSAQAAEL  DLSAFAGMVP  VEMLGGNAFP540
PIGQLTFLLT  LAPYGFYWFV  LAAENQMPSW  HVEPAQSIPD  FTTLVLKKRM  EELLEAPCRT600
TLEQTSLPAW  LPKRRWFANK  DSAIDNVHIA  YGVRFGDPLH  PVLLSEIEVT  TGGQVSRYQL660
PLGFLAEEQY  TSALPQQLAL  ARVRRVRQVG  LVTDAFSLDT  YIRAVIHGLQ  ATTVLHSTDG720
DIRFESAAQL  AQLELTDESD  VRYLAAEQSN  SSVVVGGSLV  LKLIRKVSAG  VHPELEMGAY780
LTAAGYEHIS  PLLGSVIRRD  AEGQDSLLMI  AQGYLSNQGD  AWGWTQNNLE  RAIRDELAEA840
ISEQEQHYNA  LGELADFAGM  LGQRLGEMHQ  VLAAPTANKD  FKPEVTSLKD  SQGWAKQVGA900
QIDRALQLLK  HHQGKLSAAD  QALVSALLDQ  KKLIASHVQA  LAKATVGGLR  IRVHGDLHLG960
QVLVVKGDAY  LIDFEGEPAR  PLHERRGKHS  PYKDVSGVLR  SFDYAAAMAL  NVQGVDHSPE1020
ANAARQRVAD  RYLSEARQAF  IQAYHEATTT  LAHDWQDAKG  QDAALTLFSL  EKAAYEVAYE1080
AENRPTWLPV  PLQGLHGLLS  GLKPVSKTAR  GGETS1115

Predicted 3D structure by AlphaFold2 with pLDDT = 88.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_16(39-397)

MAKKPKAATF  IKDPLWYKDA  VIYQVHVKSY  FDSNNDGIGD  FPGLITKLDY  IAELGVNTIW60
LLPFYPSPRR  DDGYDIAEYR  GVHSDYGTMA  DARRFIAEAH  KRGLRVITEL  VINHTSDQHP120
WFQRARKAKP  GSKARDFYVW  SDDDQKYDGT  RIIFLDTEKS  NWTWDPVAGQ  YFWHRFYSHQ180
PDLNFDNPQV  MKAVLSVMRY  WLDMGIDGLR  LDAIPYLIER  DGTNNENLPE  THDVLKQIRA240
EIDANYPDRM  LLAEANQWPE  DTQLYFGDKK  GDDGDECHMA  FHFPLMPRMY  MALAQEDRFP300
ITDILRQTPE  IPANCQWAIF  LRNHDELTLE  MVTDKERDYL  WNYYAADRRA  RINLGIRRRL360
APLMERDRRR  VELLNSLLLS  MPGTPTLYYG  DEIGMGDNIY  LGDRDGVRTP  MQWSIDRNGG420
FSRADPASLV  LPPIMDPLYG  YQSVNVETQA  QDPHSLLNWT  RRMLAIRKQS  KAFGRGSLKM480
LSPTNRRILA  YTREYTGDDG  RQEIILCVAN  VSRSAQAAEL  DLSAFAGMVP  VEMLGGNAFP540
PIGQLTFLLT  LAPYGFYWFV  LAAENQMPSW  HVEPAQSIPD  FTTLVLKKRM  EELLEAPCRT600
TLEQTSLPAW  LPKRRWFANK  DSAIDNVHIA  YGVRFGDPLH  PVLLSEIEVT  TGGQVSRYQL660
PLGFLAEEQY  TSALPQQLAL  ARVRRVRQVG  LVTDAFSLDT  YIRAVIHGLQ  ATTVLHSTDG720
DIRFESAAQL  AQLELTDESD  VRYLAAEQSN  SSVVVGGSLV  LKLIRKVSAG  VHPELEMGAY780
LTAAGYEHIS  PLLGSVIRRD  AEGQDSLLMI  AQGYLSNQGD  AWGWTQNNLE  RAIRDELAEA840
ISEQEQHYNA  LGELADFAGM  LGQRLGEMHQ  VLAAPTANKD  FKPEVTSLKD  SQGWAKQVGA900
QIDRALQLLK  HHQGKLSAAD  QALVSALLDQ  KKLIASHVQA  LAKATVGGLR  IRVHGDLHLG960
QVLVVKGDAY  LIDFEGEPAR  PLHERRGKHS  PYKDVSGVLR  SFDYAAAMAL  NVQGVDHSPE1020
ANAARQRVAD  RYLSEARQAF  IQAYHEATTT  LAHDWQDAKG  QDAALTLFSL  EKAAYEVAYE1080
AENRPTWLPV  PLQGLHGLLS  GLKPVSKTAR  GGETS1115

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help