CAZyme3D

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Entry ID

Information for CAZyme ID: QJE03471.1

Basic Information

GenBank IDQJE03471.1
FamilyGH105
Sequence Length359
UniProt IDA0A7Z2W237(100,100)Download
Average pLDDT?96.30
CAZy50 ID13873
CAZy50 RepNo, QRX64606.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2728020
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia forsythiae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPAAAPRPTR  AQALAALERA  NRYWQAHNPP  EKWPFWDVAA  YHTGNMAAYA  LTGNASWRAY60
STAWAEHNRW  RGASSDVKAD  WKYTYGETGD  HVLFGDWQVC  FQTYADLYNL  DPVKDARKIA120
RAREVMEYQM  ATSNRDYWWW  ADGIYMAMPV  MTRLYAITGE  RRYLDKLQEW  FTYADELMYD180
REAGLYYRDA  RYVYPKHASG  NGGKDFWARG  DGWVFAAFAR  TLADLPQDHP  VRPLLVARYR240
RMAAALKATQ  QPQGYWTRSL  LDPQFAPGPE  SSGTAFFTYG  YLWGINHGYL  DRADYAPVAL300
RGWDFLSRTA  LGPDGKLGYV  QPIGDRAIPG  QVVNQDSTAP  FGVGAFLLAG  TEMVRFLDR359

Predicted 3D structure by AlphaFold2 with pLDDT = 96.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH105(29-355)

MPAAAPRPTR  AQALAALERA  NRYWQAHNPP  EKWPFWDVAA  YHTGNMAAYA  LTGNASWRAY60
STAWAEHNRW  RGASSDVKAD  WKYTYGETGD  HVLFGDWQVC  FQTYADLYNL  DPVKDARKIA120
RAREVMEYQM  ATSNRDYWWW  ADGIYMAMPV  MTRLYAITGE  RRYLDKLQEW  FTYADELMYD180
REAGLYYRDA  RYVYPKHASG  NGGKDFWARG  DGWVFAAFAR  TLADLPQDHP  VRPLLVARYR240
RMAAALKATQ  QPQGYWTRSL  LDPQFAPGPE  SSGTAFFTYG  YLWGINHGYL  DRADYAPVAL300
RGWDFLSRTA  LGPDGKLGYV  QPIGDRAIPG  QVVNQDSTAP  FGVGAFLLAG  TEMVRFLDR359

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help