CAZyme3D

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Entry ID

Information for CAZyme ID: QJE03112.1

Basic Information

GenBank IDQJE03112.1
FamilyGH3
Sequence Length481
UniProt IDA0A7Z2W272(100,100)Download
Average pLDDT?93.53
CAZy50 ID63009
CAZy50 RepNo, AMO96352.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2728020
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia forsythiae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRLAGTALD  EDSAAFIRAN  RIRGACLFRQ  NMVDAGQLGE  LTGALRAAMG  ENALIALDQE60
GGAVVRSLWV  PPPPSAMALG  AADDPALARD  VGAAVARAVK  SMGFNWNFAP  VLDLNNNPLN120
PVIAERSFGA  DPQRAAAIAL  AWMAGSQAEG  VACCVKHFPG  HGDTHVDSHR  DLPTVDKPLD180
ELERFEFAPF  RTAAPHAPAV  MTAHIVYPAL  DPHSPATMSR  AILHDLLRAG  WDYHGVIITD240
GMDMHAIAHR  YGAGQAALNA  LLAGADMVMA  IGSRATQEET  LDAIAGAIAD  GRLPLHEVRA300
RLDRLDRLAA  TYPALAAPYA  TEAADRALMA  RAWQRGLTAY  RAPRRPPPGA  RLRLVARQDV360
VSDGVSEAGV  PAARIAAALG  ERYDVDLVTF  ADAERFDWNA  LPADGRFTLL  ASTSRRRYGP420
HARATWQPDL  HLALWNPYQA  LDFDAPALLT  FGFAPPALEA  VNAWLAGDIE  AQGHCPVPGF480
A481

Predicted 3D structure by AlphaFold2 with pLDDT = 93.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(49-269)

MIRLAGTALD  EDSAAFIRAN  RIRGACLFRQ  NMVDAGQLGE  LTGALRAAMG  ENALIALDQE60
GGAVVRSLWV  PPPPSAMALG  AADDPALARD  VGAAVARAVK  SMGFNWNFAP  VLDLNNNPLN120
PVIAERSFGA  DPQRAAAIAL  AWMAGSQAEG  VACCVKHFPG  HGDTHVDSHR  DLPTVDKPLD180
ELERFEFAPF  RTAAPHAPAV  MTAHIVYPAL  DPHSPATMSR  AILHDLLRAG  WDYHGVIITD240
GMDMHAIAHR  YGAGQAALNA  LLAGADMVMA  IGSRATQEET  LDAIAGAIAD  GRLPLHEVRA300
RLDRLDRLAA  TYPALAAPYA  TEAADRALMA  RAWQRGLTAY  RAPRRPPPGA  RLRLVARQDV360
VSDGVSEAGV  PAARIAAALG  ERYDVDLVTF  ADAERFDWNA  LPADGRFTLL  ASTSRRRYGP420
HARATWQPDL  HLALWNPYQA  LDFDAPALLT  FGFAPPALEA  VNAWLAGDIE  AQGHCPVPGF480
A481

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help