CAZyme3D

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Entry ID

Information for CAZyme ID: QJB40647.1

Basic Information

GenBank IDQJB40647.1
FamilyGH125
Sequence Length476
UniProt IDA0A6H2BN67(100,100)Download
Average pLDDT?94.22
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2725414
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga oryzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVARRDFIRN  SALLAGAVSL  GMPKTVLGWD  GYSSQRPPVA  KRKFTSDAVE  KTIASVKKQI60
ADNKLAWMFE  NCFPNTLDTT  VNFKTMDGRP  DTFVITGDIN  AMWLRDSSAQ  VWPYIPLIKE120
DKKLEQMVAG  VINRQVKCIL  IDPYANAFND  GPTGSEWEKD  LTDMKPELHE  RKWEIDSLCY180
PVRLAYHYWK  HGGDTSVFDA  KYKQSAQLIV  KTFKEQQRKE  GKGPYKFQRV  TAWQSDTVPN240
SGYGSPMLPV  GLIVSIFRPS  DDATVFPFLI  PSNMFAVVSL  RQLAEISTEI  YKDAAFAKEC300
AELADEVDRA  IKAYAIVEHP  YLGNMYGFEV  DGFGNRLFID  DTNVPSLLSI  PYLGYTTADD360
PLYQASRHFV  WSSFHPWFYK  GKYGDGVGSP  HTGVDYIWPM  SIIMRALTSQ  SKEEIAACIK420
TLRNTDGNTG  FIHESYHKDD  PTKFTRKWFA  WACTLFGELI  LKVSQEYPDL  LKRQYA476

Predicted 3D structure by AlphaFold2 with pLDDT = 94.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(62-461)

MVARRDFIRN  SALLAGAVSL  GMPKTVLGWD  GYSSQRPPVA  KRKFTSDAVE  KTIASVKKQI60
ADNKLAWMFE  NCFPNTLDTT  VNFKTMDGRP  DTFVITGDIN  AMWLRDSSAQ  VWPYIPLIKE120
DKKLEQMVAG  VINRQVKCIL  IDPYANAFND  GPTGSEWEKD  LTDMKPELHE  RKWEIDSLCY180
PVRLAYHYWK  HGGDTSVFDA  KYKQSAQLIV  KTFKEQQRKE  GKGPYKFQRV  TAWQSDTVPN240
SGYGSPMLPV  GLIVSIFRPS  DDATVFPFLI  PSNMFAVVSL  RQLAEISTEI  YKDAAFAKEC300
AELADEVDRA  IKAYAIVEHP  YLGNMYGFEV  DGFGNRLFID  DTNVPSLLSI  PYLGYTTADD360
PLYQASRHFV  WSSFHPWFYK  GKYGDGVGSP  HTGVDYIWPM  SIIMRALTSQ  SKEEIAACIK420
TLRNTDGNTG  FIHESYHKDD  PTKFTRKWFA  WACTLFGELI  LKVSQEYPDL  LKRQYA476

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help