Information for CAZyme ID: QIW52867.1
Basic Information
| GenBank ID | QIW52867.1 |
| Family | CBM50 |
| Sequence Length | 512 |
| UniProt ID | A0A6H0UDC4(100,100) |
| Average pLDDT? | 73.44 |
| CAZy50 ID | 62017 |
| CAZy50 Rep | No, QDJ26859.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1366 |
| Kingdom | Bacteria |
| Phylum | Bacillota |
| Class | Bacilli |
| Order | Lactobacillales |
| Family | Streptococcaceae |
| Genus | Lactococcus |
| Species | Lactococcus raffinolactis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MGKHDQPTIN NYQKTTVKFA LSASTVAGVL AFSNAASADT YTVEPGDSLW HIAQKFNTSV | 60 |
| EALTALNGIS NPAQIVAGQT IETSQPAQAV AATATPAAPA KAQPAITYTV KPGDTLWDIA | 120 |
| QAQNVSVEDI IKNSKLTNTD FIYIGQELII KPAVAAKRPD PIIIPAVTYI VKPGDTLWDI | 180 |
| AQAQKVSVED ITKHSKLPSP DYIFAGQELV IKPAQTIKGG ILTITAETLA SETNLTIANA | 240 |
| QNAIDIANHL MAQEGFTLEG ASGALAVAER ESGFNPEAVN HSGGVAGVFQ WSGWSNMING | 300 |
| NRWSKAEART LSLDVQLKLV STELNGAFTK VKDIVGNATD PKQASLDWSL YYEGVALTDP | 360 |
| QTQVSIIEQN AQKWYDLLKD YVDFDGDLAV PIDVNQGPYS TGNTYTAGNC TWYAKDVFKA | 420 |
| RMGDWWGNAK DWAANASREG LRVDDQPVAN LTIAVFAPGS AGADATYGHV AVVIGVSGDT | 480 |
| VTVKEMNAAA GLGKTSIRTI PKNAASYIHM DY | 512 |
Predicted 3D structure by AlphaFold2 with pLDDT = 73.44 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM50(41-81)+CBM50(108-150)+CBM50(169-211)
| MGKHDQPTIN NYQKTTVKFA LSASTVAGVL AFSNAASADT YTVEPGDSLW HIAQKFNTSV | 60 |
| EALTALNGIS NPAQIVAGQT IETSQPAQAV AATATPAAPA KAQPAITYTV KPGDTLWDIA | 120 |
| QAQNVSVEDI IKNSKLTNTD FIYIGQELII KPAVAAKRPD PIIIPAVTYI VKPGDTLWDI | 180 |
| AQAQKVSVED ITKHSKLPSP DYIFAGQELV IKPAQTIKGG ILTITAETLA SETNLTIANA | 240 |
| QNAIDIANHL MAQEGFTLEG ASGALAVAER ESGFNPEAVN HSGGVAGVFQ WSGWSNMING | 300 |
| NRWSKAEART LSLDVQLKLV STELNGAFTK VKDIVGNATD PKQASLDWSL YYEGVALTDP | 360 |
| QTQVSIIEQN AQKWYDLLKD YVDFDGDLAV PIDVNQGPYS TGNTYTAGNC TWYAKDVFKA | 420 |
| RMGDWWGNAK DWAANASREG LRVDDQPVAN LTIAVFAPGS AGADATYGHV AVVIGVSGDT | 480 |
| VTVKEMNAAA GLGKTSIRTI PKNAASYIHM DY | 512 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.