CAZyme3D

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Entry ID

Information for CAZyme ID: QIU94668.1

Basic Information

GenBank IDQIU94668.1
FamilyGH133
Sequence Length645
UniProt IDA0A6H0KQ39(100,100)Download
Average pLDDT?96.48
CAZy50 ID43985
CAZy50 RepNo, ALJ24891.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2715212
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides faecium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSYLRFDKTL  MTNLEESLQR  EILRTNKAGA  YHCTTIVDCN  TRKYHGLLVI  PVPNIDDENH60
VLLSSLDETV  IQHGAEFNLG  LHKYQGNNFS  PNGHKYIREF  DCEHIPATTY  RVGGVILRKE120
KIFVHHENRI  LIRYTLLDAH  SATTLRFRPF  LAFRSVREYT  HENAQASREY  QLVENGIKTC180
MYPGYPELYM  QLNKKCEFHF  QPDWYRGIEY  PKEQERGYDF  NEDLYVPGYF  EVDIKKGESI240
VFSAGTSEIT  PRRLKQTFEA  EVADRTPRDS  FYHCLKNSAH  QFHNQQEDEH  YILAGYPWFK300
CRARDMFIAL  PGLTLSIDEV  DQFEDVMKTA  EKAIRNFINE  EPVGYKIYEM  EHPDVLLWAV360
WALQQYTKET  SREQCRQKYG  ELLKDIMEFI  RQRKHDNLFL  HENGLLYANG  TEKAITWMNS420
TVNGHPVIPR  TGYIVEFNAL  WYNALRFVAD  LVREGGDVYL  ADELDAQAEV  TGKSFVDVFR480
NEYGYLLDYV  DGNMMDWSVR  PNMIFTVAFD  YSPLDRAQKK  QVLDIVTKEL  LTPKGIRSLS540
PKSGGYNPNY  VGPQVQRDYA  YHQGTAWPWL  MGFYLEAYLR  IYKMSGLSFV  ERQLISYDDE600
MTSHCVGSLA  ELFDGNPPFR  GRGAVSFAMN  TAEILRVLKL  LSKYY645

Predicted 3D structure by AlphaFold2 with pLDDT = 96.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(285-636)

MSYLRFDKTL  MTNLEESLQR  EILRTNKAGA  YHCTTIVDCN  TRKYHGLLVI  PVPNIDDENH60
VLLSSLDETV  IQHGAEFNLG  LHKYQGNNFS  PNGHKYIREF  DCEHIPATTY  RVGGVILRKE120
KIFVHHENRI  LIRYTLLDAH  SATTLRFRPF  LAFRSVREYT  HENAQASREY  QLVENGIKTC180
MYPGYPELYM  QLNKKCEFHF  QPDWYRGIEY  PKEQERGYDF  NEDLYVPGYF  EVDIKKGESI240
VFSAGTSEIT  PRRLKQTFEA  EVADRTPRDS  FYHCLKNSAH  QFHNQQEDEH  YILAGYPWFK300
CRARDMFIAL  PGLTLSIDEV  DQFEDVMKTA  EKAIRNFINE  EPVGYKIYEM  EHPDVLLWAV360
WALQQYTKET  SREQCRQKYG  ELLKDIMEFI  RQRKHDNLFL  HENGLLYANG  TEKAITWMNS420
TVNGHPVIPR  TGYIVEFNAL  WYNALRFVAD  LVREGGDVYL  ADELDAQAEV  TGKSFVDVFR480
NEYGYLLDYV  DGNMMDWSVR  PNMIFTVAFD  YSPLDRAQKK  QVLDIVTKEL  LTPKGIRSLS540
PKSGGYNPNY  VGPQVQRDYA  YHQGTAWPWL  MGFYLEAYLR  IYKMSGLSFV  ERQLISYDDE600
MTSHCVGSLA  ELFDGNPPFR  GRGAVSFAMN  TAEILRVLKL  LSKYY645

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help