CAZyme3D

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Entry ID

Information for CAZyme ID: QIP69379.1

Basic Information

GenBank IDQIP69379.1
FamilyGH18
Sequence Length418
UniProt IDA0A6G9ER00(100,100)Download
Average pLDDT?91.13
CAZy50 ID28136
CAZy50 RepNo, DAA01336.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1821625
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. VN1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHVPHLPRVR  PVRALFSTLC  TVALGAGLLA  GAGPATATAP  APAAESGTQA  AAGSKVVGYF60
TEWGVYDRNY  HVKNIESSGS  ASELTHINYS  FGNVTGGKCA  MGDSFAATER  TYTADESVDG120
TADAWDQPLR  GNFNQLLELK  QKHPDLKILW  SFGGWTWSGG  FGEAAQDPAA  FAQSCYDLVE180
NSKWADVFDG  IDIDWEYPNA  CGLSCDTSGR  DAFPKLMSAL  RAKFGDDYLV  TAAITADATS240
GGKIDAADYA  GAAQYVDWYN  PMTYDFFGAW  DATGPTAPHS  PLTSYDGIPK  ADFDTSATIA300
KLKDLGVPSE  KLLLGLGFYG  RGWTGVTQDA  PGGTATGPAK  GTYEDGIEDY  KVLKSSCPAT360
GTVGGTAYAK  CGSDWWSYDT  PETIATKMAY  KNEQGLGGTF  FWELSGDTAN  GELIKAID418

Predicted 3D structure by AlphaFold2 with pLDDT = 91.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(54-412)

MHVPHLPRVR  PVRALFSTLC  TVALGAGLLA  GAGPATATAP  APAAESGTQA  AAGSKVVGYF60
TEWGVYDRNY  HVKNIESSGS  ASELTHINYS  FGNVTGGKCA  MGDSFAATER  TYTADESVDG120
TADAWDQPLR  GNFNQLLELK  QKHPDLKILW  SFGGWTWSGG  FGEAAQDPAA  FAQSCYDLVE180
NSKWADVFDG  IDIDWEYPNA  CGLSCDTSGR  DAFPKLMSAL  RAKFGDDYLV  TAAITADATS240
GGKIDAADYA  GAAQYVDWYN  PMTYDFFGAW  DATGPTAPHS  PLTSYDGIPK  ADFDTSATIA300
KLKDLGVPSE  KLLLGLGFYG  RGWTGVTQDA  PGGTATGPAK  GTYEDGIEDY  KVLKSSCPAT360
GTVGGTAYAK  CGSDWWSYDT  PETIATKMAY  KNEQGLGGTF  FWELSGDTAN  GELIKAID418

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help