CAZyme3D

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Entry ID

Information for CAZyme ID: QIO52290.1

Basic Information

GenBank IDQIO52290.1
FamilyGT51
Sequence Length819
UniProt IDA0A858IZR7(100,100)Download
Average pLDDT?89.02
CAZy50 ID15576
CAZy50 RepNo, WDI30871.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID386
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium leguminosarum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRLFGYFFG  IACVLFLVAA  AGIAIYLANV  AKDLPDYAVL  NSYAPPVTTR  VHAGNGALMA60
EYAKEKRLFL  PIQAIPDRVK  AAFLSAEDKN  FYNHPGVDLT  GLGRAILVNL  QNFGSGRRPV120
GASTITQQVA  KNFLLSSDQT  IDRKIKEAIL  SFRIEQAYSK  DKILELYLNE  IFFGLNSYGI180
AGAALTYFNK  SVTELTVAEA  AYLASLPKGP  ANYHPFRHPE  AALERRNWVI  DRMVENGYVS240
QSDGEEAKKQ  PLGVTARTTG  PSLFASDYFA  EAVRRQLIDQ  YGEKVLYEGG  LSVRTSLDPQ300
MQLAARKALQ  DGLVTYDERR  GFHGPIKQID  ANGDWGKALA  DIPTLSDVPE  WRLAVVLAVS360
DSTVDIGLQP  GKDGSGKVAA  DRQRGTIDAK  NMQWAFRSAD  GARKTTKSPV  GAVAPGDVVY420
VEKLGDDTST  SYRLQQPPKV  QGGLVAMDPK  TGRVLAMVGG  FSYSQSEFNR  ATQAMRQPGS480
SFKPFVYAAA  MDNGYTPASV  IMDAPIEIVS  GGQVWKPENY  GGEVGGPSTL  RSGIEHSRNL540
MTVRLANDLG  MNIVAEYAER  FGIYDHMLPV  LSMSLGAGDT  TVLRMVSAYS  VIANGGKQIK600
PTLIDRIQDR  YGKTIFKHEE  RLCEGCNAGD  WQNQEEPNIV  DNRETVLDPM  TAYQITSMMQ660
GVIQRGTAAG  KIDLGGRDVA  GKTGTTNDEK  DAWFVGFTPD  LVAGLYMGFD  TPAPLGRGGT720
GGVLSAPIFN  EFMQAAVKDT  PESKFVIPSG  MNLISIDRKT  GMAAGDGDPN  TIIEAFKPGT780
GPADSFSVIG  MDSTMAPEEI  LKTSPQANQA  VQTGTPGLF819

Predicted 3D structure by AlphaFold2 with pLDDT = 89.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(56-234)

MVRLFGYFFG  IACVLFLVAA  AGIAIYLANV  AKDLPDYAVL  NSYAPPVTTR  VHAGNGALMA60
EYAKEKRLFL  PIQAIPDRVK  AAFLSAEDKN  FYNHPGVDLT  GLGRAILVNL  QNFGSGRRPV120
GASTITQQVA  KNFLLSSDQT  IDRKIKEAIL  SFRIEQAYSK  DKILELYLNE  IFFGLNSYGI180
AGAALTYFNK  SVTELTVAEA  AYLASLPKGP  ANYHPFRHPE  AALERRNWVI  DRMVENGYVS240
QSDGEEAKKQ  PLGVTARTTG  PSLFASDYFA  EAVRRQLIDQ  YGEKVLYEGG  LSVRTSLDPQ300
MQLAARKALQ  DGLVTYDERR  GFHGPIKQID  ANGDWGKALA  DIPTLSDVPE  WRLAVVLAVS360
DSTVDIGLQP  GKDGSGKVAA  DRQRGTIDAK  NMQWAFRSAD  GARKTTKSPV  GAVAPGDVVY420
VEKLGDDTST  SYRLQQPPKV  QGGLVAMDPK  TGRVLAMVGG  FSYSQSEFNR  ATQAMRQPGS480
SFKPFVYAAA  MDNGYTPASV  IMDAPIEIVS  GGQVWKPENY  GGEVGGPSTL  RSGIEHSRNL540
MTVRLANDLG  MNIVAEYAER  FGIYDHMLPV  LSMSLGAGDT  TVLRMVSAYS  VIANGGKQIK600
PTLIDRIQDR  YGKTIFKHEE  RLCEGCNAGD  WQNQEEPNIV  DNRETVLDPM  TAYQITSMMQ660
GVIQRGTAAG  KIDLGGRDVA  GKTGTTNDEK  DAWFVGFTPD  LVAGLYMGFD  TPAPLGRGGT720
GGVLSAPIFN  EFMQAAVKDT  PESKFVIPSG  MNLISIDRKT  GMAAGDGDPN  TIIEAFKPGT780
GPADSFSVIG  MDSTMAPEEI  LKTSPQANQA  VQTGTPGLF819

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help