CAZyme3D

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Entry ID

Information for CAZyme ID: QIL76881.1

Basic Information

GenBank IDQIL76881.1
FamilyGH50
Sequence Length486
UniProt IDA0A6G8CDB9(100,100)Download
Average pLDDT?92.89
CAZy50 ID68549
CAZy50 RepNo, UOQ97004.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2714932
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. HDW8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLRAALHDVR  FVGASLLLLG  ATTAVQAQNR  DSAEYTLRVA  AKKTINNSQI  DGKAGFSEYK60
SYPTRTIAQL  QDFKPTTIKL  SKYGGRLDKR  TKATGFFHVK  KIEGRWWAID  PEGYYFLHNA120
PNDVQPGRSE  RTKKALQEKY  KDNAGWMAAT  RKFLFENGFN  GTGAWSATKE  IQAENMKADK180
PLAYTINLDL  MSGYGSKRGG  TYVQPGHKGY  PNDVIFVFDP  GFEEFVEEAT  KQLAKNKNDK240
NLFGYFSDNE  MPLLRKNLDG  YLTLPPAEPG  YVAAKKWADE  RGITLATITD  QHRQDFLAYA300
AERYFSIVAK  AMKRNDPNHM  YLGCRFHGAQ  RYYPELMRVA  GKYLDAVSIN  YYNNWTPEKK360
WVAEWEQVAG  KPFMVTEWYV  KGEDAPELAN  TAGAGWVVKT  QEDRGLFYQN  FTLGLLESKN420
CVGWHWFKYQ  DNDPTLVGAE  PSNTNANKGI  VNNYLEPYKP  LLDKMRELNQ  QMYTLADFFD480
KRQPQP486

Predicted 3D structure by AlphaFold2 with pLDDT = 92.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(134-474)

MLRAALHDVR  FVGASLLLLG  ATTAVQAQNR  DSAEYTLRVA  AKKTINNSQI  DGKAGFSEYK60
SYPTRTIAQL  QDFKPTTIKL  SKYGGRLDKR  TKATGFFHVK  KIEGRWWAID  PEGYYFLHNA120
PNDVQPGRSE  RTKKALQEKY  KDNAGWMAAT  RKFLFENGFN  GTGAWSATKE  IQAENMKADK180
PLAYTINLDL  MSGYGSKRGG  TYVQPGHKGY  PNDVIFVFDP  GFEEFVEEAT  KQLAKNKNDK240
NLFGYFSDNE  MPLLRKNLDG  YLTLPPAEPG  YVAAKKWADE  RGITLATITD  QHRQDFLAYA300
AERYFSIVAK  AMKRNDPNHM  YLGCRFHGAQ  RYYPELMRVA  GKYLDAVSIN  YYNNWTPEKK360
WVAEWEQVAG  KPFMVTEWYV  KGEDAPELAN  TAGAGWVVKT  QEDRGLFYQN  FTLGLLESKN420
CVGWHWFKYQ  DNDPTLVGAE  PSNTNANKGI  VNNYLEPYKP  LLDKMRELNQ  QMYTLADFFD480
KRQPQP486

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help