CAZyme3D

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Entry ID

Information for CAZyme ID: QIL75269.1

Basic Information

GenBank IDQIL75269.1
FamilyGH125
Sequence Length472
UniProt IDA0A6G8C8V4(100,100)Download
Average pLDDT?94.21
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2714932
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. HDW8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRRAFVQSF  SLLTGSVFFR  HYSFAGGALA  FPLVRPAVAQ  RRFTSRSVEA  AIAEFQKKVK60
DPELGWLFNN  CFPSTLDTTV  THTNRQGRPD  TYVITGDIDA  MWLRDSSAQV  WPYLNFIDKD120
AELRQLVAGV  INRQTRCIIK  DPYANAFYGD  DTKVGEWKSD  LTKMQPGVHE  RKWEIDSLCY180
PIRLAYHYWK  KTNDSLPFDG  QWQQAIRATL  QTFREQQRKT  ELGPYKFQRE  TAVATDTQSM240
SGYGYPVRPV  GLICSAFRPS  DDATLYSFLV  PSNFFAVVSL  RQAREMMTSL  AYDHTTAAEL300
NALADEVEIA  LRKYAVVTHP  EHGKLYAYEV  DGFGSHVLMD  DANVPSLLSL  PYLGAVPATD360
AVYQNTRKFL  LSQANPFFFK  GTAAGGIGGP  HVGQDMIWPI  AITMRGLTST  NDAEIRACVQ420
SLKSTHAGTG  YMHESFHKDN  PAKFTRAWFA  WANTIFGEFL  WQVYQQKPQL  LA472

Predicted 3D structure by AlphaFold2 with pLDDT = 94.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(61-460)

MNRRAFVQSF  SLLTGSVFFR  HYSFAGGALA  FPLVRPAVAQ  RRFTSRSVEA  AIAEFQKKVK60
DPELGWLFNN  CFPSTLDTTV  THTNRQGRPD  TYVITGDIDA  MWLRDSSAQV  WPYLNFIDKD120
AELRQLVAGV  INRQTRCIIK  DPYANAFYGD  DTKVGEWKSD  LTKMQPGVHE  RKWEIDSLCY180
PIRLAYHYWK  KTNDSLPFDG  QWQQAIRATL  QTFREQQRKT  ELGPYKFQRE  TAVATDTQSM240
SGYGYPVRPV  GLICSAFRPS  DDATLYSFLV  PSNFFAVVSL  RQAREMMTSL  AYDHTTAAEL300
NALADEVEIA  LRKYAVVTHP  EHGKLYAYEV  DGFGSHVLMD  DANVPSLLSL  PYLGAVPATD360
AVYQNTRKFL  LSQANPFFFK  GTAAGGIGGP  HVGQDMIWPI  AITMRGLTST  NDAEIRACVQ420
SLKSTHAGTG  YMHESFHKDN  PAKFTRAWFA  WANTIFGEFL  WQVYQQKPQL  LA472

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help