CAZyme3D

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Entry ID

Information for CAZyme ID: QID32701.1

Basic Information

GenBank IDQID32701.1
FamilyGT0
Sequence Length260
UniProt IDA0A6C1BSA9(100,100)Download
Average pLDDT?96.57
CAZy50 ID165668
CAZy50 RepNo, BAI70168.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1632019
KingdomBacteria
PhylumAquificota
ClassAquificae
OrderAquificales
FamilyAquificaceae
GenusHydrogenobacter
SpeciesHydrogenobacter sp. T-8

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWLLYRRGGL  GDTLLTFPIL  ELLKKSGRNV  WAVGNTDYFA  IAKEVGWVDM  VSSEMPETEF60
EGKILISYEG  NVKPFPEKRM  WIVEHYFQSL  SLRGGFSKVL  PLEPAEKSPI  KGCAVLHPSS120
GSWKKNPPLE  LFFRIEAFLK  KEGYKTIYLV  GEADQWLKDH  VKDYFESYSP  LEIARALRTA180
RLFVGLDSGL  SHLASYCGIP  TFVFYGPTDP  VVWKPIGERV  FQISLELSCS  PCFPEVCEER240
SCLHVEKLFA  EFLKAFSALS  260

Predicted 3D structure by AlphaFold2 with pLDDT = 96.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT9(81-241)

MWLLYRRGGL  GDTLLTFPIL  ELLKKSGRNV  WAVGNTDYFA  IAKEVGWVDM  VSSEMPETEF60
EGKILISYEG  NVKPFPEKRM  WIVEHYFQSL  SLRGGFSKVL  PLEPAEKSPI  KGCAVLHPSS120
GSWKKNPPLE  LFFRIEAFLK  KEGYKTIYLV  GEADQWLKDH  VKDYFESYSP  LEIARALRTA180
RLFVGLDSGL  SHLASYCGIP  TFVFYGPTDP  VVWKPIGERV  FQISLELSCS  PCFPEVCEER240
SCLHVEKLFA  EFLKAFSALS  260

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help