CAZyme3D

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Entry ID

Information for CAZyme ID: QIA09623.1

Basic Information

GenBank IDQIA09623.1
FamilyGH2
Sequence Length1255
UniProt IDA0A6C0RJA6(100,100)Download
Average pLDDT?92.83
CAZy50 ID6822
CAZy50 RepNo, QGY43634.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2706887
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderMarinilabiliales
FamilyProlixibacteraceae
GenusDraconibacterium
SpeciesDraconibacterium halophilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRATTLFFV  LTFYFFSFSQ  QVEFLPGDWE  NPAVFEKGQN  VPHAFHIPYE  SVDNAIQNMP60
RKCENYQLLN  GQWKFKWVET  PQKVPKDFWK  PDFDDTQWDE  IKVPANWQME  GYGHPKFRNV120
AMSIENDPPN  VPDYYNPTGC  YKTKFTVPEN  WENKEVMLRF  EGIKSASYIW  VNGQQVGYNQ180
GGFEPAEFNL  ASFIKKGEND  LAVQVIRFSD  GSYLENQDMW  RLSGIFRDVK  LYAQPKTFIH240
DHYVVTDFDE  NYKDATLTVE  THIRNKLPEA  KTGEIVVDVY  DIEGRSILKD  GSLQEDFEVD300
SMGNMKVQLS  TLIVDPPQWS  AEFPTLFTML  VQLKNTNGKV  TEAFTQKIGF  REVEYKDKIL360
TVNGVPVKLN  GVNSHMHHPE  HGQAVPLETL  KQDLLLMKQH  NINCVRTCHY  PPTPEYIALA420
DELGMYIFDE  VGDEAHNNIN  LSEKPEWTEM  YRDRSRKLVY  RDRNHPSVIV  WSAGNESGSG480
QNINEVIKTG  KAIDPSRPAW  MYGGNTFYIP  FEDVVGPRYW  VPMDYKNLAQ  GKVLPANDMR540
ASFMDEYLAA  TGNGLGGMDE  YWEYIWKYPR  LTGGAIWDWI  SPGINTPRWT  LPDLSPQKID600
GQIMGRPLFQ  QGVYGWGLEF  SGHDDWVEFY  RDPSLDITKQ  LTIDFWVKPS  EIPQANVFIA660
KGKHGYGIQM  DDAETLEFYV  HGDKRISAKT  KVDSGFYENW  HHISGLYNGS  SLQLFVDNKR720
VATTSYDGII  SSTPFPLCIG  REAESQDQGE  HSGRMSRMVI  DNVRVFNKAV  NINNIEDEKE780
GLVLHLNFEE  DEKDGDFYAV  GLGGRTYGII  WPDRTVQPEI  NQIKRSGQPV  KFEAIDIENG840
VLKVTNRHHF  KNLNELEGFW  QITVDGETSQ  RGFFVCDIPA  GETGEITIDY  RRPRIESTTE900
CLLEVSFLLK  ENLNWAPKGH  EIAWEQFAVP  TDYYFVDEEE  IKQKITASED  ENYIRISGND960
FKYTIDKKTG  SFVSLKYKGT  EYLEGGPEFM  VWRAPIANDI  DPWGSYMVGS  SNKTPGRGRS1020
IDNQLRTLGM  RDLLPGVEEY  ELFQVNNNEV  ILKMDVFSNS  SLDPARRKDQ  WFFSSAFERK1080
EIWTFSADGS  IHLEQEIIPH  GPMPEMLQKV  GLQFQLPKSF  NSVQWYGRGP  FENYPDRKTG1140
AKVGLYHSTT  DSMYVPYIIP  QEYGNRSDVR  WLKVHNEDGK  GLMIEGNEPL  NFSLHKYSTD1200
NLSRAMYTYE  LEEAPNTILN  VDYEVSGVGG  TAIRQLQKYR  VRPDVKKYSI  TIKPF1255

Predicted 3D structure by AlphaFold2 with pLDDT = 92.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(53-594)+GH2(803-1142)

MKRATTLFFV  LTFYFFSFSQ  QVEFLPGDWE  NPAVFEKGQN  VPHAFHIPYE  SVDNAIQNMP60
RKCENYQLLN  GQWKFKWVET  PQKVPKDFWK  PDFDDTQWDE  IKVPANWQME  GYGHPKFRNV120
AMSIENDPPN  VPDYYNPTGC  YKTKFTVPEN  WENKEVMLRF  EGIKSASYIW  VNGQQVGYNQ180
GGFEPAEFNL  ASFIKKGEND  LAVQVIRFSD  GSYLENQDMW  RLSGIFRDVK  LYAQPKTFIH240
DHYVVTDFDE  NYKDATLTVE  THIRNKLPEA  KTGEIVVDVY  DIEGRSILKD  GSLQEDFEVD300
SMGNMKVQLS  TLIVDPPQWS  AEFPTLFTML  VQLKNTNGKV  TEAFTQKIGF  REVEYKDKIL360
TVNGVPVKLN  GVNSHMHHPE  HGQAVPLETL  KQDLLLMKQH  NINCVRTCHY  PPTPEYIALA420
DELGMYIFDE  VGDEAHNNIN  LSEKPEWTEM  YRDRSRKLVY  RDRNHPSVIV  WSAGNESGSG480
QNINEVIKTG  KAIDPSRPAW  MYGGNTFYIP  FEDVVGPRYW  VPMDYKNLAQ  GKVLPANDMR540
ASFMDEYLAA  TGNGLGGMDE  YWEYIWKYPR  LTGGAIWDWI  SPGINTPRWT  LPDLSPQKID600
GQIMGRPLFQ  QGVYGWGLEF  SGHDDWVEFY  RDPSLDITKQ  LTIDFWVKPS  EIPQANVFIA660
KGKHGYGIQM  DDAETLEFYV  HGDKRISAKT  KVDSGFYENW  HHISGLYNGS  SLQLFVDNKR720
VATTSYDGII  SSTPFPLCIG  REAESQDQGE  HSGRMSRMVI  DNVRVFNKAV  NINNIEDEKE780
GLVLHLNFEE  DEKDGDFYAV  GLGGRTYGII  WPDRTVQPEI  NQIKRSGQPV  KFEAIDIENG840
VLKVTNRHHF  KNLNELEGFW  QITVDGETSQ  RGFFVCDIPA  GETGEITIDY  RRPRIESTTE900
CLLEVSFLLK  ENLNWAPKGH  EIAWEQFAVP  TDYYFVDEEE  IKQKITASED  ENYIRISGND960
FKYTIDKKTG  SFVSLKYKGT  EYLEGGPEFM  VWRAPIANDI  DPWGSYMVGS  SNKTPGRGRS1020
IDNQLRTLGM  RDLLPGVEEY  ELFQVNNNEV  ILKMDVFSNS  SLDPARRKDQ  WFFSSAFERK1080
EIWTFSADGS  IHLEQEIIPH  GPMPEMLQKV  GLQFQLPKSF  NSVQWYGRGP  FENYPDRKTG1140
AKVGLYHSTT  DSMYVPYIIP  QEYGNRSDVR  WLKVHNEDGK  GLMIEGNEPL  NFSLHKYSTD1200
NLSRAMYTYE  LEEAPNTILN  VDYEVSGVGG  TAIRQLQKYR  VRPDVKKYSI  TIKPF1255

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help