CAZyme3D

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Entry ID

Information for CAZyme ID: QHW29730.1

Basic Information

GenBank IDQHW29730.1
FamilyCBM35, CBM6, GH87
Sequence Length826
UniProt IDA0A6C0NU38(100,100)Download
Average pLDDT?91.41
CAZy50 ID1958
CAZy50 RepNo, QHW33736.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2704463
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus rhizovicinus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFNRKVKKVV  YSVMALTLMA  GGLLATERKT  DAAPIPETVT  YSALSSFGAS  QGIGNWFNMK60
KTGTVYSYLG  TYDATTPAKW  KEASGYPYVR  DSFFHPETTN  DAVKKWVAPQ  AGNVTITGNV120
LKVNASSNGV  IAKIFKNTTQ  LWSATVTSAA  DATPSGVSNI  HVEAGDALYF  VINANGDMNF180
DETNWSPVVT  MTTAIKIEAE  SYDSMSGVSA  AATTDTGGGQ  QVGSFDTNDY  LVYNNVNLSG240
GYKTLEARVA  DTATGGKFEV  RLDSLTGPVI  STFTVANTDG  WNNFETQSWP  ITGSATGTHN300
LYVKGVVGAG  IANINWFRLT  NNNTRGATVP  FTTYEAESGT  LGGGATTNND  ATVKKEASSG360
KSYVHLDATN  ESVQWTNVRD  ANRMIVRYSI  PQNSSGTLAL  YVNGVKRQDL  SLTSTFNYDT420
APGNSYVRSF  DDKDFAIDIN  AGDTIMLKKD  SGNSLAWYGI  DLIDLETAAA  PIALPANAIS480
VKSSPYNAVG  NGVADDTAAI  QSAVNAAASL  GKNVYFPPGT  YNQSDKITVP  SGVSVYGAGI540
WYSHLHSTVT  NNVWGGEVGF  TLNNNTTISD  LRISSVDTQR  DSHYGIAILS  NAGTGSNNVL600
QNLWAEHMGC  LEGWTDWKNS  TIQNVRLYNT  YFDGIHWGDD  GNSGNVAQNN  FMRGLGDDGV660
AQVNLMNFAN  VAQNNVAQFN  TIIASYWGRG  MSDVGGNSLT  YRDNYIDSTY  LAGMIITTEP720
VEPTKPSYTI  SGLKFQRNTI  NKAGHTGHNH  ASIQFWLDVN  PMQNVRVELN  TITNGETEGI780
HIDNTSYGDS  GGRTQFNFNV  ASGNALSNYT  NANSLVVPVL  NGNTGF826

Predicted 3D structure by AlphaFold2 with pLDDT = 91.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM6(197-320)+GH87(315-790)

MFNRKVKKVV  YSVMALTLMA  GGLLATERKT  DAAPIPETVT  YSALSSFGAS  QGIGNWFNMK60
KTGTVYSYLG  TYDATTPAKW  KEASGYPYVR  DSFFHPETTN  DAVKKWVAPQ  AGNVTITGNV120
LKVNASSNGV  IAKIFKNTTQ  LWSATVTSAA  DATPSGVSNI  HVEAGDALYF  VINANGDMNF180
DETNWSPVVT  MTTAIKIEAE  SYDSMSGVSA  AATTDTGGGQ  QVGSFDTNDY  LVYNNVNLSG240
GYKTLEARVA  DTATGGKFEV  RLDSLTGPVI  STFTVANTDG  WNNFETQSWP  ITGSATGTHN300
LYVKGVVGAG  IANINWFRLT  NNNTRGATVP  FTTYEAESGT  LGGGATTNND  ATVKKEASSG360
KSYVHLDATN  ESVQWTNVRD  ANRMIVRYSI  PQNSSGTLAL  YVNGVKRQDL  SLTSTFNYDT420
APGNSYVRSF  DDKDFAIDIN  AGDTIMLKKD  SGNSLAWYGI  DLIDLETAAA  PIALPANAIS480
VKSSPYNAVG  NGVADDTAAI  QSAVNAAASL  GKNVYFPPGT  YNQSDKITVP  SGVSVYGAGI540
WYSHLHSTVT  NNVWGGEVGF  TLNNNTTISD  LRISSVDTQR  DSHYGIAILS  NAGTGSNNVL600
QNLWAEHMGC  LEGWTDWKNS  TIQNVRLYNT  YFDGIHWGDD  GNSGNVAQNN  FMRGLGDDGV660
AQVNLMNFAN  VAQNNVAQFN  TIIASYWGRG  MSDVGGNSLT  YRDNYIDSTY  LAGMIITTEP720
VEPTKPSYTI  SGLKFQRNTI  NKAGHTGHNH  ASIQFWLDVN  PMQNVRVELN  TITNGETEGI780
HIDNTSYGDS  GGRTQFNFNV  ASGNALSNYT  NANSLVVPVL  NGNTGF826

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help