CAZyme3D

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Entry ID

Information for CAZyme ID: QHW00363.1

Basic Information

GenBank IDQHW00363.1
FamilyGH36
Sequence Length715
UniProt IDA0A6P1W7K9(100,100)Download
Average pLDDT?92.12
CAZy50 ID33703
CAZy50 RepNo, UVO49671.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2666025
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma endbachense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRSLYYTLL  NCLMTGVILA  VSVAATVVQA  QAINFARWTN  SELVLNNGIV  QRTINLPSSG60
GHFLTTEYKP  VAGDFKYFQK  TNPDFQFEIN  DNVYSGSSDW  KLVTVQKITD  TKQGNGAAVT120
LQSKDGKVEL  TLNFLLYPNL  PVIRKSLTLK  NLTNEPVRLE  SVDVEKFVVT  NYNATTFSWI180
FHDYGRRRSI  GPYDGNFQDA  LLTVHNSDWL  QGIVIGNEAA  GVVKHTSIFW  DEPTILCGLT240
HKNGRFPFRK  YIAKDESFTT  PQVFTMVYNN  HKDPDEILNT  AVPEFVRKHM  GIRLSELEKK300
PTFVYNTWVP  FRKNINEKLV  MELAKAAADA  GMKEFIIDDG  WADNYGDWII  DTKKFPNGLK360
PVFDYIKALG  MKPGMWVSVG  SASPDSKVYK  AHPDWFVLDE  NQQPANLHED  DLNMRTACFG420
TEWRGYIKDI  LLKLALDYGL  EYLKLDFTVV  TSTYRFGNKV  TGCYATHHRG  HKDHNESLST480
NYEEVWKLFD  ELHAAKPNLF  IDCTFETMGG  LQLVDYAMLK  HAEGDWLSNF  YGPPDANVDL540
RVRNMAWWRS  PAIPATALVI  GNPEMQDAGW  EMHIKSLAGA  LPIMLGDPRK  LAAPDLKKYR600
AYADWLQSME  NKHQIMTYRQ  DLAGFGEPME  GMWDGFQRIN  TETKKGGIIG  VFKHGAIETK660
RMITIQHLDP  VKQYQVKSID  GKVVIALTGQ  ALQTSGFPVT  LTGMYDGELF  EISSN715

Predicted 3D structure by AlphaFold2 with pLDDT = 92.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH36(95-696)

MKRSLYYTLL  NCLMTGVILA  VSVAATVVQA  QAINFARWTN  SELVLNNGIV  QRTINLPSSG60
GHFLTTEYKP  VAGDFKYFQK  TNPDFQFEIN  DNVYSGSSDW  KLVTVQKITD  TKQGNGAAVT120
LQSKDGKVEL  TLNFLLYPNL  PVIRKSLTLK  NLTNEPVRLE  SVDVEKFVVT  NYNATTFSWI180
FHDYGRRRSI  GPYDGNFQDA  LLTVHNSDWL  QGIVIGNEAA  GVVKHTSIFW  DEPTILCGLT240
HKNGRFPFRK  YIAKDESFTT  PQVFTMVYNN  HKDPDEILNT  AVPEFVRKHM  GIRLSELEKK300
PTFVYNTWVP  FRKNINEKLV  MELAKAAADA  GMKEFIIDDG  WADNYGDWII  DTKKFPNGLK360
PVFDYIKALG  MKPGMWVSVG  SASPDSKVYK  AHPDWFVLDE  NQQPANLHED  DLNMRTACFG420
TEWRGYIKDI  LLKLALDYGL  EYLKLDFTVV  TSTYRFGNKV  TGCYATHHRG  HKDHNESLST480
NYEEVWKLFD  ELHAAKPNLF  IDCTFETMGG  LQLVDYAMLK  HAEGDWLSNF  YGPPDANVDL540
RVRNMAWWRS  PAIPATALVI  GNPEMQDAGW  EMHIKSLAGA  LPIMLGDPRK  LAAPDLKKYR600
AYADWLQSME  NKHQIMTYRQ  DLAGFGEPME  GMWDGFQRIN  TETKKGGIIG  VFKHGAIETK660
RMITIQHLDP  VKQYQVKSID  GKVVIALTGQ  ALQTSGFPVT  LTGMYDGELF  EISSN715

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help