CAZyme3D

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Entry ID

Information for CAZyme ID: QHV87127.1

Basic Information

GenBank IDQHV87127.1
FamilyCBM50, GH23
Sequence Length342
UniProt IDA0A7L5B6A9(100,100)Download
Average pLDDT?62.14
CAZy50 ID133466
CAZy50 RepNo, QNE82801.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1476754
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. 604F

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSGNGRHRR  PRQAPAFVVA  AGVTGSAIAI  PLLGAGSASA  ADTATWDRLA  ECESGGAWST60
NAGNGYYGGL  QVTQELWERH  GGLSYAPSAD  LASRSQQIVV  AERILDAEGT  AAWATCAPAI120
GLKQGGESAD  VNPGVPSDTG  TPSASPASPA  GKGKDKGDTG  DEDGRASGKD  NKDDRDNKDE180
KGKGEKKEKG  DTASAVPSTD  PTSIPDGYPS  ASPDEEASEG  RGDLPGAPSD  APSVTPGEGE240
DSGGRHRGGT  AAEPGSGESR  EGSGRHASRG  DRGDAPDASG  AYTVKEGDSL  SVIAWLHEVD300
GGWPALYEAN  KGIVGDDADH  ILPGQALDLG  SDPAAEKDRI  GR342

Predicted 3D structure by AlphaFold2 with pLDDT = 62.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(282-327)

MLSGNGRHRR  PRQAPAFVVA  AGVTGSAIAI  PLLGAGSASA  ADTATWDRLA  ECESGGAWST60
NAGNGYYGGL  QVTQELWERH  GGLSYAPSAD  LASRSQQIVV  AERILDAEGT  AAWATCAPAI120
GLKQGGESAD  VNPGVPSDTG  TPSASPASPA  GKGKDKGDTG  DEDGRASGKD  NKDDRDNKDE180
KGKGEKKEKG  DTASAVPSTD  PTSIPDGYPS  ASPDEEASEG  RGDLPGAPSD  APSVTPGEGE240
DSGGRHRGGT  AAEPGSGESR  EGSGRHASRG  DRGDAPDASG  AYTVKEGDSL  SVIAWLHEVD300
GGWPALYEAN  KGIVGDDADH  ILPGQALDLG  SDPAAEKDRI  GR342

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help