CAZyme3D

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Entry ID

Information for CAZyme ID: QHT69229.1

Basic Information

GenBank IDQHT69229.1
FamilyGH1
Sequence Length411
UniProt IDA0A6C0GMH9(100,100)Download
Average pLDDT?93.31
CAZy50 ID75998
CAZy50 RepNo, ACG80041.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2704465
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusRhodocytophaga
SpeciesRhodocytophaga rosea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKFMFATGI  ENSYPTIKLP  NGSVKRVDEM  EKAGHYQHWY  EDFRLVKESG  IEFLRYGPPF60
YKTFVAPGVY  DWSFTDDTFH  VMQEMGITPI  VDLCHFGVPD  WLENFQNPDF  PMHFMEYARA120
FARRFPYLKL  YTPINEIFIT  AMFSAQYGWW  NERLHSEHSY  VTALKNLCKA  NLLAMQAILE180
VQPKAVFIQS  ESCEYFHAED  PSCQKRADFL  NMKRFLPLDL  TVGYASSTEV  QKYLFQHGMT240
KQEYSWFRNN  PCPGTCVIGT  DYYYTNEHMV  HPNGHTSASG  DLFGYYVIAQ  QYYKRYRLPM300
MHTETNMKEP  NSVEWLKKQW  ANLVRLRMDG  VPVIGFTWYS  LVDQVDWDTA  LREDNGHVNS360
LGMYDMNRNV  RPLGLAYQNL  IRDWSHIAEL  KWDSTLLKTN  KYAKKLELVK  A411

Predicted 3D structure by AlphaFold2 with pLDDT = 93.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH1(25-382)

MNKFMFATGI  ENSYPTIKLP  NGSVKRVDEM  EKAGHYQHWY  EDFRLVKESG  IEFLRYGPPF60
YKTFVAPGVY  DWSFTDDTFH  VMQEMGITPI  VDLCHFGVPD  WLENFQNPDF  PMHFMEYARA120
FARRFPYLKL  YTPINEIFIT  AMFSAQYGWW  NERLHSEHSY  VTALKNLCKA  NLLAMQAILE180
VQPKAVFIQS  ESCEYFHAED  PSCQKRADFL  NMKRFLPLDL  TVGYASSTEV  QKYLFQHGMT240
KQEYSWFRNN  PCPGTCVIGT  DYYYTNEHMV  HPNGHTSASG  DLFGYYVIAQ  QYYKRYRLPM300
MHTETNMKEP  NSVEWLKKQW  ANLVRLRMDG  VPVIGFTWYS  LVDQVDWDTA  LREDNGHVNS360
LGMYDMNRNV  RPLGLAYQNL  IRDWSHIAEL  KWDSTLLKTN  KYAKKLELVK  A411

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help