Information for CAZyme ID: QHT69229.1
Basic Information
GenBank ID | QHT69229.1 |
Family | GH1 |
Sequence Length | 411 |
UniProt ID | A0A6C0GMH9(100,100)![]() |
Average pLDDT? | 93.31 |
CAZy50 ID | 75998 |
CAZy50 Rep | No, ACG80041.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2704465 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Cytophagia |
Order | Cytophagales |
Family | Cytophagaceae |
Genus | Rhodocytophaga |
Species | Rhodocytophaga rosea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNKFMFATGI ENSYPTIKLP NGSVKRVDEM EKAGHYQHWY EDFRLVKESG IEFLRYGPPF | 60 |
YKTFVAPGVY DWSFTDDTFH VMQEMGITPI VDLCHFGVPD WLENFQNPDF PMHFMEYARA | 120 |
FARRFPYLKL YTPINEIFIT AMFSAQYGWW NERLHSEHSY VTALKNLCKA NLLAMQAILE | 180 |
VQPKAVFIQS ESCEYFHAED PSCQKRADFL NMKRFLPLDL TVGYASSTEV QKYLFQHGMT | 240 |
KQEYSWFRNN PCPGTCVIGT DYYYTNEHMV HPNGHTSASG DLFGYYVIAQ QYYKRYRLPM | 300 |
MHTETNMKEP NSVEWLKKQW ANLVRLRMDG VPVIGFTWYS LVDQVDWDTA LREDNGHVNS | 360 |
LGMYDMNRNV RPLGLAYQNL IRDWSHIAEL KWDSTLLKTN KYAKKLELVK A | 411 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.31 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH1(25-382)
MNKFMFATGI ENSYPTIKLP NGSVKRVDEM EKAGHYQHWY EDFRLVKESG IEFLRYGPPF | 60 |
YKTFVAPGVY DWSFTDDTFH VMQEMGITPI VDLCHFGVPD WLENFQNPDF PMHFMEYARA | 120 |
FARRFPYLKL YTPINEIFIT AMFSAQYGWW NERLHSEHSY VTALKNLCKA NLLAMQAILE | 180 |
VQPKAVFIQS ESCEYFHAED PSCQKRADFL NMKRFLPLDL TVGYASSTEV QKYLFQHGMT | 240 |
KQEYSWFRNN PCPGTCVIGT DYYYTNEHMV HPNGHTSASG DLFGYYVIAQ QYYKRYRLPM | 300 |
MHTETNMKEP NSVEWLKKQW ANLVRLRMDG VPVIGFTWYS LVDQVDWDTA LREDNGHVNS | 360 |
LGMYDMNRNV RPLGLAYQNL IRDWSHIAEL KWDSTLLKTN KYAKKLELVK A | 411 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.