CAZyme3D

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Entry ID

Information for CAZyme ID: QHS59558.1

Basic Information

GenBank IDQHS59558.1
FamilyCE12, GH28
Sequence Length731
UniProt IDA0A6B9ZB88(100,100)Download
Average pLDDT?94.90
CAZy50 ID27687
CAZy50 RepNo, UEG49495.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2703787
KingdomBacteria
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga agri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLYLLALLF  PLISWIPTDD  PPRIFMIGDS  TMADKPLADN  PERGWGQLFP  LFLQKGVTVK60
NYAVNGRSTK  SFINEHRWDS  VLVQLKAGDW  VIIQFGHNDS  KKDDSTRFAA  PKGAYKDNLI120
RFVKEVRAKG  ANPVLVTPVQ  RRKFDEKGTF  VDQHGEYPGV  VREIAASYKV  PLIDLHKSSE180
ALLVQHGVAG  SEKLFKTTPA  GHYTALPNGV  TDNTHFNTYG  ATLVAGLVAR  EIREKHIGLE240
RYLAQTEFEG  KYRFDLPEIY  EPHFKRDTLM  ITAFGAKPDG  VTLNSKSIND  AITKASANGG300
GVVMIPPGLW  LTGPIVLKSN  VNLYLAPNAL  LQFTTDFDQY  PLVETTYEGL  RAMRCQAPVS360
AVNAENIAIT  GKGIIDGGGD  AWRIVKKDKL  TESQWKKLLA  SGGIEGEDKK  TWYPSAKSQK420
GSHTKLAGVI  APGKTLADYD  DIKDFLRPNL  LSITSCKYVL  LEGVTFQNSP  AWCLHPLLTE480
HITLRDIYAK  NPWYAQNGDG  VDLESCRYAR  IEGCTFDVGD  DGICIKSGRD  EQGRKRGVAT540
EDVIVNNCTV  YHAHGGFVVG  SEMSGGARNL  YVSNCSFLGT  DIGLRFKTTR  GRGGIVEKIY600
VNNINMKDIP  AEAILFDMYY  MAKDPVPLSG  EKRDAPKVEL  FPVTEATPQF  KDFHITNVVC660
HGAEKAIFIR  GLPEMPISDI  YLKDITIKAK  KAGDCIVGSN  INMTNVTLIT  TDNGKINVQD720
SKQVKLDISK  R731

Predicted 3D structure by AlphaFold2 with pLDDT = 94.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(23-232)+GH28(295-699)

MKLYLLALLF  PLISWIPTDD  PPRIFMIGDS  TMADKPLADN  PERGWGQLFP  LFLQKGVTVK60
NYAVNGRSTK  SFINEHRWDS  VLVQLKAGDW  VIIQFGHNDS  KKDDSTRFAA  PKGAYKDNLI120
RFVKEVRAKG  ANPVLVTPVQ  RRKFDEKGTF  VDQHGEYPGV  VREIAASYKV  PLIDLHKSSE180
ALLVQHGVAG  SEKLFKTTPA  GHYTALPNGV  TDNTHFNTYG  ATLVAGLVAR  EIREKHIGLE240
RYLAQTEFEG  KYRFDLPEIY  EPHFKRDTLM  ITAFGAKPDG  VTLNSKSIND  AITKASANGG300
GVVMIPPGLW  LTGPIVLKSN  VNLYLAPNAL  LQFTTDFDQY  PLVETTYEGL  RAMRCQAPVS360
AVNAENIAIT  GKGIIDGGGD  AWRIVKKDKL  TESQWKKLLA  SGGIEGEDKK  TWYPSAKSQK420
GSHTKLAGVI  APGKTLADYD  DIKDFLRPNL  LSITSCKYVL  LEGVTFQNSP  AWCLHPLLTE480
HITLRDIYAK  NPWYAQNGDG  VDLESCRYAR  IEGCTFDVGD  DGICIKSGRD  EQGRKRGVAT540
EDVIVNNCTV  YHAHGGFVVG  SEMSGGARNL  YVSNCSFLGT  DIGLRFKTTR  GRGGIVEKIY600
VNNINMKDIP  AEAILFDMYY  MAKDPVPLSG  EKRDAPKVEL  FPVTEATPQF  KDFHITNVVC660
HGAEKAIFIR  GLPEMPISDI  YLKDITIKAK  KAGDCIVGSN  INMTNVTLIT  TDNGKINVQD720
SKQVKLDISK  R731

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help