CAZyme3D

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Entry ID

Information for CAZyme ID: QHQ38140.1

Basic Information

GenBank IDQHQ38140.1
FamilyGH51
Sequence Length517
UniProt IDA0A6P1T952(100,100)Download
Average pLDDT?94.89
CAZy50 ID57037
CAZy50 RepNo, UJQ28827.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID48074
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer hydrolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLKHYFAVV  AVSLTFSVFA  AEDNPKITID  STRPGATINR  DIYGQFAEHL  GRGIYEGIWV60
GKDSEIENIN  GFRTDVIEAL  REINVPLVRW  PGGCFADEYR  WRDGIGPRDQ  RPVRVNTHWG120
GVEEDNAFGT  HEFFELVELL  GAEAYVNGNL  GTGNPREMAE  WLEYMTGTSN  SVVVEERRKN180
GRDAPWKIAY  FGVGNEAWGC  GGHMRPAYYA  DLYNHFATFL  KTPRGSEPKF  VASGGHTTDT240
SWTDVLSKNV  QRQMDGISFH  FYTLPTANWD  DKGESTGFPE  DQWFATLWQT  LRMDEFIRLN300
KKVLDKNDPE  KKLGFYVDEW  GTWYNPEEGR  EPGFLYQQNT  LRDAVVAALN  FNVFHEHADR360
VHMTNIAQMV  NVLQAMILTD  KEKMVLTPTY  HVYDLYQVFQ  DATALPFEIE  NPSSYRVGDQ420
SLPGISASAA  RGKDGQIYLS  LVNLDPNQSQ  NISVDVKGLE  LTRADGRLIT  ADTMDAHNTF480
VAPNQIVPGD  YQAEAEGSGA  LQLEVPAKSV  LVVALKN517

Predicted 3D structure by AlphaFold2 with pLDDT = 94.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(25-516)

MKLKHYFAVV  AVSLTFSVFA  AEDNPKITID  STRPGATINR  DIYGQFAEHL  GRGIYEGIWV60
GKDSEIENIN  GFRTDVIEAL  REINVPLVRW  PGGCFADEYR  WRDGIGPRDQ  RPVRVNTHWG120
GVEEDNAFGT  HEFFELVELL  GAEAYVNGNL  GTGNPREMAE  WLEYMTGTSN  SVVVEERRKN180
GRDAPWKIAY  FGVGNEAWGC  GGHMRPAYYA  DLYNHFATFL  KTPRGSEPKF  VASGGHTTDT240
SWTDVLSKNV  QRQMDGISFH  FYTLPTANWD  DKGESTGFPE  DQWFATLWQT  LRMDEFIRLN300
KKVLDKNDPE  KKLGFYVDEW  GTWYNPEEGR  EPGFLYQQNT  LRDAVVAALN  FNVFHEHADR360
VHMTNIAQMV  NVLQAMILTD  KEKMVLTPTY  HVYDLYQVFQ  DATALPFEIE  NPSSYRVGDQ420
SLPGISASAA  RGKDGQIYLS  LVNLDPNQSQ  NISVDVKGLE  LTRADGRLIT  ADTMDAHNTF480
VAPNQIVPGD  YQAEAEGSGA  LQLEVPAKSV  LVVALKN517

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help