CAZyme3D

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Entry ID

Information for CAZyme ID: QHO70392.1

Basic Information

GenBank IDQHO70392.1
FamilyCBM5, GH18
Sequence Length527
UniProt IDA0A7L5AK14(100,100)Download
Average pLDDT?87.85
CAZy50 ID61901
CAZy50 RepNo, AFR30237.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID674079
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMarisediminicola
SpeciesMarisediminicola antarctica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSAATSAAST  QPVAPRRRLS  ALRVVLSVAL  VGLLASGGFV  GWQWWSAAQA  VEDHEPWFAG60
YVDVTATPTF  AFEAPASDAG  RDVVLSFIVA  AKDDACEPTW  GTGYTLEEAS  HALDLDRRLA120
RLDQLGGQIT  VSFGGLLNDE  LATGCTNVND  LVDAYASVVD  RYEITTIDLD  IEAGNLTNTS180
AGERRAEAIH  TLQVERRSAG  DDLAVWLTLP  VAPSGLTEYG  TTAVSQMLDA  GVDLAGVNVM240
TMDYGSSRTD  GDSMAMASIQ  ALQSTHRQLG  ALYSRAGIEL  SPASLWTKIG  ATPMIGQNDV300
PGEVFGLADA  EEFNAFALEQ  RIGRMSLWSL  NRDQSCGSNY  VDLKRVSDSC  SGIDQGDVRF360
VDLLGEGFDG  RPDGSAGAVT  TADTLEEIVD  DPATSPYAIW  APEASYLEGT  KIVWHRSVYQ420
AKWWTRGELP  DNPVLNEWET  PWTLIGPVLP  GETPFEMPTL  PKGTYPEWEG  PTIYEKGDRV480
LFDGVPFESK  WWNEGESPEA  ASSNPDGAPW  APLAESEVGA  ILDALEQ527

Predicted 3D structure by AlphaFold2 with pLDDT = 87.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(64-256)+CBM5(397-438)+CBM5(465-510)

MSAATSAAST  QPVAPRRRLS  ALRVVLSVAL  VGLLASGGFV  GWQWWSAAQA  VEDHEPWFAG60
YVDVTATPTF  AFEAPASDAG  RDVVLSFIVA  AKDDACEPTW  GTGYTLEEAS  HALDLDRRLA120
RLDQLGGQIT  VSFGGLLNDE  LATGCTNVND  LVDAYASVVD  RYEITTIDLD  IEAGNLTNTS180
AGERRAEAIH  TLQVERRSAG  DDLAVWLTLP  VAPSGLTEYG  TTAVSQMLDA  GVDLAGVNVM240
TMDYGSSRTD  GDSMAMASIQ  ALQSTHRQLG  ALYSRAGIEL  SPASLWTKIG  ATPMIGQNDV300
PGEVFGLADA  EEFNAFALEQ  RIGRMSLWSL  NRDQSCGSNY  VDLKRVSDSC  SGIDQGDVRF360
VDLLGEGFDG  RPDGSAGAVT  TADTLEEIVD  DPATSPYAIW  APEASYLEGT  KIVWHRSVYQ420
AKWWTRGELP  DNPVLNEWET  PWTLIGPVLP  GETPFEMPTL  PKGTYPEWEG  PTIYEKGDRV480
LFDGVPFESK  WWNEGESPEA  ASSNPDGAPW  APLAESEVGA  ILDALEQ527

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help