CAZyme3D

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Entry ID

Information for CAZyme ID: QHC98187.1

Basic Information

GenBank IDQHC98187.1
FamilyGH102
Sequence Length390
UniProt IDA0A7Z2KZX2(100,100)Download
Average pLDDT?88.54
CAZy50 ID86704
CAZy50 RepNo, QZX85945.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1573712
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. R84

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNSRFQAWRQ  PLIATLPLLA  ILAGCTGGET  AKPKTHALAT  YSSATWEALP  AVSDSDLVAG60
FGSWRSACTR  LKADAVWGTI  CAAAANVPQS  ATEIRAFLKQ  NLDVYGLRAE  NDNPNGLITG120
YYEPVYPGSL  TPTDTANVPV  YGVPEDMIIV  SLESIYPELK  GKRLRGRLEG  RVLKPYDDAA180
TIESKGVKAP  VVAYLTDPMN  LQFLQIQGSG  RIQTEDGKQL  RIAYADQNGH  PYRPIGRWLV240
EQGELKKEDV  TMSAISNWAK  ANPSRIPELL  GSNPSYVFFT  RNPDSNEGPR  GSLNVPLTAG300
YSAAVDRKVI  PLGSLLWLST  TKPDGTALVR  PVAAQDTGGA  IAGEVRADLF  WGTGDAAGQL360
AGDMKQQGQI  WMLWPKGAAL  PQVPQVADKP  390

Predicted 3D structure by AlphaFold2 with pLDDT = 88.54 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(127-279)

MNSRFQAWRQ  PLIATLPLLA  ILAGCTGGET  AKPKTHALAT  YSSATWEALP  AVSDSDLVAG60
FGSWRSACTR  LKADAVWGTI  CAAAANVPQS  ATEIRAFLKQ  NLDVYGLRAE  NDNPNGLITG120
YYEPVYPGSL  TPTDTANVPV  YGVPEDMIIV  SLESIYPELK  GKRLRGRLEG  RVLKPYDDAA180
TIESKGVKAP  VVAYLTDPMN  LQFLQIQGSG  RIQTEDGKQL  RIAYADQNGH  PYRPIGRWLV240
EQGELKKEDV  TMSAISNWAK  ANPSRIPELL  GSNPSYVFFT  RNPDSNEGPR  GSLNVPLTAG300
YSAAVDRKVI  PLGSLLWLST  TKPDGTALVR  PVAAQDTGGA  IAGEVRADLF  WGTGDAAGQL360
AGDMKQQGQI  WMLWPKGAAL  PQVPQVADKP  390

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help